RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ZNF572	Q7Z3I7	529 aa	Predicted RBP	10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	GCNT2	Q8N0V5	402 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	LRRC75A-AS1	Q8N1F1	130 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	PLD6	Q8N2A8	252 aa	Known RBP	10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	PPP1R14C	Q8TAE6	165 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	FBXO25	Q8TCJ0	367 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	INTS12	Q96CB8	462 aa	Known RBP	10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	CNRIP1	Q96F85	164 aa	Predicted RBP	10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	LCOR	Q96JN0	433 aa	Predicted RBP	10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	NSUN5	Q96P11	429 aa	Known RBP	10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	PIP5K1A	Q99755	562 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	TM9SF2	Q99805	663 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	YIPF4	Q9BSR8	244 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	NTMT1	Q9BV86	223 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	NOL11	Q9H8H0	719 aa	Known RBP	10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	METTL7A	Q9H8H3	244 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	EHD3	Q9NZN3	535 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	FBXL2	Q9UKC9	423 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	PCTP	Q9UKL6	214 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	MAPRE3	Q9UPY8	281 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	PLLP	Q9Y342	182 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815	ANGPTL3	Q9Y5C1	460 aa		10.12	□□□□□ -0.79
PTPN7-204	ENST00000462815		A0A1W2PNV4	684 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	PRAMEF25	A6NGN4	478 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	PLOD2	O00469	737 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	ACOX3	O15254	700 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	CTIF	O43310	598 aa	Known RBP	10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	CBR3	O75828	277 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	LY6G6D	O95868	133 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	GFAP	P14136	432 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	DRD5	P21918	477 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	STX2	P32856	288 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	MAGEA4	P43358	317 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	MAGEA12	P43365	314 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	STAR	P49675	285 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	CLDN15	P56746	228 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	PLCXD2	Q0VAA5	305 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	CALCOCO2	Q13137	446 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	TOMM20	Q15388	145 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	LTB4R	Q15722	352 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	WHAMMP3	Q1A5X7	153 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	FAM83E	Q2M2I3	478 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	GGTA1P	Q4G0N0	100 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	TRMT12	Q53H54	448 aa	Known RBP	10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	MROH9	Q5TGP6	573 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	FRG2	Q64ET8	278 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	C22orf34	Q6ZV56	151 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	COMMD6	Q7Z4G1	85 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	CCDC91	Q7Z6B0	441 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	TRIM42	Q8IWZ5	723 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	SPATA4	Q8NEY3	305 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	OR52R1	Q8NGF1	315 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	TRPC4AP	Q8TEL6	797 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	TM4SF18	Q96CE8	201 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	STARD4	Q96DR4	205 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	SLC35A4	Q96G79	324 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	BTBD9	Q96Q07	612 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	FRG2B	Q96QU4	278 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	MDFI	Q99750	246 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	LRRC1	Q9BTT6	524 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	PIGM	Q9H3S5	423 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	FARSB	Q9NSD9	589 aa	Known RBP	10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	ZNF225	Q9UK10	706 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	PACSIN3	Q9UKS6	424 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	GPR55	Q9Y2T6	319 aa	Predicted RBP	10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815	WIF1	Q9Y5W5	379 aa		10.11	□□□□□ -0.79
PTPN7-204	ENST00000462815		A0A096LPK6	155 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	C1orf226	A1L170	272 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	FRG2C	A6NGY1	282 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	OR6C70	A6NIJ9	312 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815		H0Y3Z8	333 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	PPP6C	O00743	305 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	ZIC3	O60481	467 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	TSPAN2	O60636	221 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	CGA	P01215	116 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	RPS17	P08708	135 aa	Known RBP	10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	SBK3	P0C264	359 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	CT45A8	P0DMV1	189 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	CT45A9	P0DMV2	189 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	PCSK2	P16519	638 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	SRD5A2	P31213	254 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	FEN1	P39748	380 aa	Known RBP	10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	PAFAH1B1	P43034	410 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	PPIC	P45877	212 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	MRPS35	P82673	323 aa	Known RBP	10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	FAM27E3	Q08E93	113 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	GUSBP1	Q15486	140 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	CT45A2	Q5DJT8	189 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	ZNF628	Q5EBL2	1059 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815		Q5PR19	223 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	FAM180B	Q6P0A1	224 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	VWA1	Q6PCB0	445 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	ZNF474	Q6S9Z5	364 aa	Predicted RBP	10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	NPSR1	Q6W5P4	371 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	RPS27L	Q71UM5	84 aa	Known RBP	10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	IFNE	Q86WN2	208 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	PLCZ1	Q86YW0	608 aa		10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	PTGR2	Q8N8N7	351 aa	Predicted RBP	10.1	□□□□□ -0.79
PTPN7-204	ENST00000462815	ADCY4	Q8NFM4	1077 aa		10.1	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms