RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TINAGQ9UJW2 476 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 NPIPA1Q9UND3 350 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 PPIEQ9UNP9 301 aaKnown RBP6.74□□□□□ -1.33
USP54-208ENST00000461520 MEMO1Q9Y316 297 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 ZFHX3Q15911 3703 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 MYO7BQ6PIF6 2116 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 ADGRG4Q8IZF6 3080 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 CELSR1Q9NYQ6 3014 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 PKDREJQ9NTG1 2253 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 LRIT2A6NDA9 550 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 ANKDD1BA6NHY2 528 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 USP27XA6NNY8 438 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 C4orf51C9J302 202 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 KLRC4-KLRK1H3BQV0 150 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 CLDN4O14493 209 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 CLGNO14967 610 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 EIF3HO15372 352 aaKnown RBP eCLIP6.73□□□□□ -1.33
USP54-208ENST00000461520 ERI3O43414 337 aaKnown RBP6.73□□□□□ -1.33
USP54-208ENST00000461520 ERN1O75460 977 aaKnown RBP6.73□□□□□ -1.33
USP54-208ENST00000461520 MYO1DO94832 1006 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 ABOP16442 354 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 ZNF24P17028 368 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 TFEBP19484 476 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 RPL21P46778 160 aaKnown RBP6.73□□□□□ -1.33
USP54-208ENST00000461520 RAB38P57729 211 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 ATP6V0D1P61421 351 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 CALCOCO2Q13137 446 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 RUNX2Q13950 521 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 RCN2Q14257 317 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 ADPRMQ3LIE5 342 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 TRIM40Q6P9F5 258 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 Q6ZNX1 250 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 ZNF595Q8IYB9 648 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 CPSF7Q8N684 471 aaKnown RBP6.73□□□□□ -1.33
USP54-208ENST00000461520 FITM2Q8N6M3 262 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 OR2L5Q8NG80 312 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 TBC1D15Q8TC07 691 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 PYROXD1Q8WU10 500 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 CCT6BQ92526 530 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 WDR34Q96EX3 536 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 PTCD3Q96EY7 689 aaKnown RBP6.73□□□□□ -1.33
USP54-208ENST00000461520 VMP1Q96GC9 406 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 PDLIM2Q96JY6 352 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 SERINC2Q96SA4 455 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 TMEM79Q9BSE2 394 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 AICDAQ9GZX7 198 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 RHBGQ9H310 441 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 CNOT10Q9H9A5 744 aaKnown RBP6.73□□□□□ -1.33
USP54-208ENST00000461520 UNKLQ9H9P5 680 aaKnown RBP6.73□□□□□ -1.33
USP54-208ENST00000461520 PRTFDC1Q9NRG1 225 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 SMYD2Q9NRG4 433 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 DNAJC11Q9NVH1 559 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 TXNDC16Q9P2K2 825 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 MRPS33Q9Y291 106 aaKnown RBP6.73□□□□□ -1.33
USP54-208ENST00000461520 KLF13Q9Y2Y9 288 aaPredicted RBP6.73□□□□□ -1.33
USP54-208ENST00000461520 SNX24Q9Y343 169 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 AKAP9Q99996 3911 aa6.73□□□□□ -1.33
USP54-208ENST00000461520 SCN2AQ99250 2005 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 SCN3AQ9NY46 2000 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 HIVEP1P15822 2718 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 MED13LQ71F56 2210 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 TRBV11-1A0A0K0K1C0 115 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 NCF1BA6NI72 391 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 A8MUA0 341 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 NCF1CA8MVU1 366 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 E9PLN8 166 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 TAPBPO15533 448 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 STK16O75716 305 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 ZFAND5O76080 213 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 ZFPL1O95159 310 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 CLDN14O95500 239 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 TBX6O95947 436 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 GSTA2P09210 222 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 CCDC166P0CW27 439 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 NCF1P14598 390 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 COX6B1P14854 86 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 CD1DP15813 335 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 STMN1P16949 149 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 SSTR1P30872 391 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 HNRNPH1P31943 449 aaKnown RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 GP5P40197 560 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 GPR143P51810 404 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 PLA2G16P53816 162 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 MTTPP55157 894 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 LIM2P55344 173 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 KRTAP1-1Q07627 177 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 TGM3Q08188 693 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 SLC13A2Q13183 592 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 ZKSCAN8Q15776 578 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 TBCCQ15814 346 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 PDK4Q16654 411 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 HIST2H2ACQ16777 129 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 C18orf21Q32NC0 220 aaPredicted RBP6.72□□□□□ -1.33
USP54-208ENST00000461520 PAGE2BQ5JRK9 111 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 HIST2H2AA3Q6FI13 130 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 SULT1C3Q6IMI6 304 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 PGM2L1Q6PCE3 622 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 MAATS1Q7Z4T9 603 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 DOLPP1Q86YN1 238 aa6.72□□□□□ -1.33
USP54-208ENST00000461520 GPSM1Q86YR5 675 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms