RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 LINC01599Q8WXQ3 324 aa8.56□□□□□ -1.04
NIPBL-202ENST00000448238 AMDHD1Q96NU7 426 aa8.56□□□□□ -1.04
NIPBL-202ENST00000448238 LMF2Q9BU23 707 aaKnown RBP8.56□□□□□ -1.04
NIPBL-202ENST00000448238 BET1LQ9NYM9 111 aa8.56□□□□□ -1.04
NIPBL-202ENST00000448238 PURGQ9UJV8 347 aaKnown RBP8.56□□□□□ -1.04
NIPBL-202ENST00000448238 LIPT1Q9Y234 373 aa8.56□□□□□ -1.04
NIPBL-202ENST00000448238 COQ4Q9Y3A0 265 aa8.56□□□□□ -1.04
NIPBL-202ENST00000448238 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.56□□□□□ -1.04
NIPBL-202ENST00000448238 ABCA7Q8IZY2 2146 aa8.56□□□□□ -1.04
NIPBL-202ENST00000448238 MED12Q93074 2177 aa8.56□□□□□ -1.04
NIPBL-202ENST00000448238 SMLR1H3BR10 107 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 PQBP1O60828 265 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 PIRTP0C851 137 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TAGLN2P37802 199 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 REEP5Q00765 189 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 GRB7Q14451 532 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 GDPGP1Q6ZNW5 385 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TMEM173Q86WV6 379 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 OR52H1Q8NGJ2 320 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 OR51T1Q8NGJ9 327 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 FAM151AQ8WW52 585 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TAS2R14Q9NYV8 317 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TSPOAP1O95153 1857 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TEX50A0A1B0GTY4 177 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 DVL2O14641 736 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 BUD23O43709 281 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 ITGB8P26012 769 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 RAB13P51153 203 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 FXYD4P59646 89 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 CEBPEQ15744 281 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 NPAS4Q8IUM7 802 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 CNTN4Q8IWV2 1026 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 HERVK_113Q902F9 699 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SHC3Q92529 594 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 MAP3K3Q99759 626 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 DNAJB11Q9UBS4 358 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 RAI2Q9Y5P3 530 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TP53P04637 393 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TMEM225BP0DP42 221 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 DDCP20711 480 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 KDELR2P33947 212 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SCNN1AP37088 669 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 NR0B1P51843 470 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 RAC1P63000 192 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SMAD3P84022 425 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SPHARQ15513 63 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 ETFRF1Q6IPR1 90 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 C3orf67Q6ZVT6 689 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 FAM122BQ7Z309 247 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TIPARPQ7Z3E1 657 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 CMC1Q7Z7K0 106 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 ANKRD9Q96BM1 317 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 LGALS12Q96DT0 336 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 GPRC5CQ9NQ84 441 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TMX2Q9Y320 296 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 HSPE1-MOB4S4R3N1 261 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 ZGRF1Q86YA3 2104 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 PLSCR5A0PG75 271 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 RECQL4O94761 1208 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 IDH3AP50213 366 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 AGBL3Q8NEM8 1001 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SLC24A4Q8NFF2 622 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 OR51G2Q8NGK0 314 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 RNF141Q8WVD5 230 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 INTS12Q96CB8 462 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SGTBQ96EQ0 304 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 CXXC1Q9P0U4 656 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SLC6A14Q9UN76 642 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TOP2BQ02880 1626 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 LOC105369274A0A096LPK9 316 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 VSTM2BA6NLU5 285 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 GPR37L1O60883 481 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 ENPP1P22413 925 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 ENDOGQ14249 297 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 LIPJQ5W064 366 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 OR4N4Q8N0Y3 316 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SYT14Q8NB59 555 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 C1orf198Q9H425 327 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 DNAJC27Q9NZQ0 273 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 YIPF1Q9Y548 306 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 TIMM13Q9Y5L4 95 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SLC22A23A1A5C7 686 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 LACTBL1A8MY62 500 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 H0YIV9 168 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 H3BMQ9 156 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 NDUFS4O43181 175 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 GATCO43716 136 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 ZNF728P0DKX0 622 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 BMXP51813 675 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 CATSPEREQ5SY80 951 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SYT6Q5T7P8 510 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 PPP2R2DQ66LE6 453 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 PSRC1Q6PGN9 363 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 RHBDF2Q6PJF5 856 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 SLC46A3Q7Z3Q1 461 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 MRPL10Q7Z7H8 261 aaKnown RBP8.55□□□□□ -1.04
NIPBL-202ENST00000448238 FJX1Q86VR8 437 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 GPR137CQ8N3F9 429 aa8.55□□□□□ -1.04
NIPBL-202ENST00000448238 MAB21L3Q8N8X9 362 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms