RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 OR2G6Q5TZ20 316 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 GPR139Q6DWJ6 353 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 TMEM107Q6UX40 140 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 SFTPA1Q8IWL2 248 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 GPALPP1Q8IXQ4 340 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 NXPE1Q8N323 547 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 DTX3Q8N9I9 347 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 PMEPA1Q969W9 287 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 SENP5Q96HI0 755 aaPredicted RBP8.09□□□□□ -1.12
HPS4-206ENST00000439453 NT5DC2Q9H857 520 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 TVP23BQ9NYZ1 205 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 ZNF222Q9UK12 451 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 ACSL6Q9UKU0 697 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 MAP4K5Q9Y4K4 846 aa8.09□□□□□ -1.12
HPS4-206ENST00000439453 RPS10-NUDT3A0A1W2PQS6 291 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 PRR33A8MZF0 331 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 TLX2O43763 284 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 C6orf47O95873 294 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 C8GP07360 202 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 DDCP20711 480 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 CCR7P32248 378 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 ATP5C1P36542 298 aaKnown RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 LIM2P55344 173 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 TPBGQ13641 420 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 GPR176Q14439 515 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 ZNF630Q2M218 657 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 XKR6Q5GH73 641 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 LIPJQ5W064 366 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 TYW3Q6IPR3 259 aaKnown RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 BRAT1Q6PJG6 821 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 C16orf62Q7Z3J2 963 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 PCNPQ8WW12 178 aaKnown RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 SORCS2Q96PQ0 1159 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 FOXQ1Q9C009 403 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 HDHD2Q9H0R4 259 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 RETREG1Q9H6L5 497 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 EMC7Q9NPA0 242 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 RABL2AQ9UBK7 228 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 MGAT4BQ9UQ53 548 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 TNRC6BQ9UPQ9 1833 aaKnown RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 ATP6V1G2-DDX39BF2Z307 99 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 TSPAN4O14817 238 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 PRKYO43930 277 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 OR10H3O60404 316 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 NCR1O76036 304 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 CLDN7O95471 211 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 ETHE1O95571 254 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 NR2F6P10588 404 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 OPRD1P41143 372 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 SLC11A2P49281 568 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 PCBP3P57721 371 aaKnown RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 RHOAP61586 193 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 ZNF33BQ06732 778 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 GRK1Q15835 563 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 SNAPC1Q16533 368 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 MPPE1Q53F39 396 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 KLHL12Q53G59 568 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 CLLU1Q5K131 121 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 TRIM40Q6P9F5 258 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 OXR1Q8N573 874 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 IQCF1Q8N6M8 205 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 ZNF655Q8N720 491 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 OR11H4Q8NGC9 324 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 GOT1L1Q8NHS2 421 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 ASB11Q8WXH4 323 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 GATAD2BQ8WXI9 593 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 UFD1Q92890 307 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 DPCDQ9BVM2 203 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 POLR2J3Q9H1A7 115 aaKnown RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 SYNDIG1Q9H7V2 258 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 BRD9Q9H8M2 597 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 TESQ9UGI8 421 aaKnown RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 FBXO9Q9UK97 447 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 ANGPT4Q9Y264 503 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 LZTS3O60299 673 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 SLC6A1P30531 599 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 FGF9P31371 208 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 CTHP32929 405 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 BDKRB1P46663 353 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 ATP12AP54707 1039 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 PFN3P60673 137 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 LRRC74AQ0VAA2 488 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 RUNX3Q13761 415 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 PUM1Q14671 1186 aaKnown RBP eCLIP8.08□□□□□ -1.12
HPS4-206ENST00000439453 BCL2L15Q5TBC7 163 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 MZT2AQ6P582 158 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 PRSS42Q7Z5A4 293 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 DENND1CQ8IV53 801 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 ETFBKMTQ8IXQ9 262 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 GPR156Q8NFN8 814 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 OR11H7Q8NGC8 314 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 IRF7Q92985 503 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 TOE1Q96GM8 510 aaKnown RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 P2RY13Q9BPV8 354 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 TMEM121BQ9BXQ6 578 aaPredicted RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 UCKL1Q9NWZ5 548 aa8.08□□□□□ -1.12
HPS4-206ENST00000439453 FCF1Q9Y324 198 aaKnown RBP8.08□□□□□ -1.12
HPS4-206ENST00000439453 GNG14A0A1W2PPG7 69 aa8.07□□□□□ -1.12
HPS4-206ENST00000439453 SLC9A3R1O14745 358 aaPredicted RBP8.07□□□□□ -1.12
HPS4-206ENST00000439453 STOMP27105 288 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms