RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ITGA2P17301 1181 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 EVI2BP34910 448 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PNLIPRP1P54315 467 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 CHRNEQ04844 493 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 SCN1BQ07699 218 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PCDH1Q08174 1060 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PLEKHS1Q5SXH7 462 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 METAP1DQ6UB28 335 aaPredicted RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 Q6ZNB5 142 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 UBQLNLQ8IYU4 475 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PXYLP1Q8TE99 480 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 VOPP1Q96AW1 172 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 ECHDC3Q96DC8 303 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 C12orf66Q96MD2 445 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 SECISBP2Q96T21 854 aaKnown RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 DPH7Q9BTV6 452 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 GABARAPL3Q9BY60 117 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 B3GAT2Q9NPZ5 323 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 V9GYH0 126 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 A0A0G2JMP0 313 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 CENPVL1A0A0U1RR11 272 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 A0A0X1KG70 313 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 NPC1O15118 1278 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 EEF1E1O43324 174 aaKnown RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 PTTG1O95997 202 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 SEMG1P04279 462 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 CD3GP09693 182 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 CBSLP0DN79 551 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 GABRB1P18505 474 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 CERS1P27544 350 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 CBSP35520 551 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 IRS1P35568 1242 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 MC3RP41968 323 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 FADDQ13158 208 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 SYT14P1Q58G82 188 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PRSS45Q7RTY3 260 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 CCDC190Q86UF4 302 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 NRMQ8IXM6 262 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 OXR1Q8N573 874 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 OR4M2Q8NGB6 313 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 OR9A2Q8NGT5 310 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 ORAI3Q9BRQ5 295 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 GABARAPL1Q9H0R8 117 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 DDX31Q9H8H2 851 aaKnown RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 STARD5Q9NSY2 213 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 USP36Q9P275 1121 aaKnown RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 CRNNQ9UBG3 495 aaPredicted RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 FTSJ1Q9UET6 329 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 ALG5Q9Y673 324 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PRRC2CQ9Y520 2896 aaKnown RBP8.15□□□□□ -1.1
USP40-203ENST00000427112 A0A1W2PRG6 482 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 NDUFS4O43181 175 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 CDC123O75794 336 aaPredicted RBP8.15□□□□□ -1.1
USP40-203ENST00000427112 MSL3P1P0C860 447 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 OSMP13725 252 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 TBXA2RP21731 343 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 KELP23276 732 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 FAM26DQ5JW98 314 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 NDUFAF5Q5TEU4 345 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 PLBD1Q6P4A8 553 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 OR8D4Q8NGM9 314 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 OR10G6Q8NH81 332 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 FCGR1BQ92637 280 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 SLC35G5Q96KT7 338 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 ENKD1Q9H0I2 346 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 CHST8Q9H2A9 424 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 ELAC1Q9H777 363 aaKnown RBP8.15□□□□□ -1.1
USP40-203ENST00000427112 ADAP2Q9NPF8 381 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 ATP13A2Q9NQ11 1180 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 NANSQ9NR45 359 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 SPHK2Q9NRA0 654 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 CREBZFQ9NS37 354 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 CIB4A0PJX0 185 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 ZAR1LA6NP61 321 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 BTN3A3O00478 584 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 RNASET2O00584 256 aaKnown RBP8.15□□□□□ -1.1
USP40-203ENST00000427112 CAPN5O15484 640 aaPredicted RBP8.15□□□□□ -1.1
USP40-203ENST00000427112 SLCO2B1O94956 709 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 CRYZL1O95825 349 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 NR2F6P10588 404 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 MYOGP15173 224 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 RHCEP18577 417 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 GIPRP48546 466 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 SIM1P81133 766 aaPredicted RBP8.15□□□□□ -1.1
USP40-203ENST00000427112 FAM205BPQ63HN1 556 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 SAXO2Q658L1 398 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 FAAP20Q6NZ36 180 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 FIGNL1Q6PIW4 674 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 ZNF367Q7RTV3 350 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 SFTPA2Q8IWL1 248 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 DENND6BQ8NEG7 585 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 NEIL3Q8TAT5 605 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 SPRYD4Q8WW59 207 aaPredicted RBP8.15□□□□□ -1.1
USP40-203ENST00000427112 FRMD6Q96NE9 622 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 KATNB1Q9BVA0 655 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 DPP7Q9UHL4 492 aa8.15□□□□□ -1.1
USP40-203ENST00000427112 ZNF346Q9UL40 294 aaKnown RBP8.15□□□□□ -1.1
USP40-203ENST00000427112 B4DXG7 233 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 LRRN3E7EW58 273 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 H0YIV9 168 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms