RNA–Protein interactions for RNA: ENST00000425319.1

HLA-DQB3-203, Transcript of major histocompatibility complex, class II, DQ beta 3, humanhuman

BASIC

Gene HLA-DQB3, Length 356 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB3-203ENST00000425319 ABCA4P78363 2273 aa11.15□□□□□ -0.62
HLA-DQB3-203ENST00000425319 C2orf72A6NCS6 295 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 OR6C70A6NIJ9 312 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 SLC22A20A6NK97 555 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 WASHC1A8K0Z3 465 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 CXorf49A8MYA2 514 aaPredicted RBP11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PLOD2O00469 737 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PIAS1O75925 651 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 ATP1B1P05026 303 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PHBP35232 272 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FEN1P39748 380 aaKnown RBP11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 DSCR4P56555 118 aaPredicted RBP11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 TRA2BP62995 288 aaKnown RBP11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FOXF2Q12947 444 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 SGCBQ16585 318 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FNDC7Q5VTL7 733 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FRG2Q64ET8 278 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 SLC48A1Q6P1K1 146 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 GOLGA7Q7Z5G4 137 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 CCDC25Q86WR0 208 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 GCNT2Q8N0V5 402 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 RNF175Q8N4F7 328 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 SPATA3Q8NHX4 192 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 WDR20Q8TBZ3 569 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 TMEM171Q8WVE6 324 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 ARSGQ96EG1 525 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 ZNF845Q96IR2 970 aaPredicted RBP11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FRG2BQ96QU4 278 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 NODALQ96S42 347 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 NAPGQ99747 312 aaPredicted RBP11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 RAB17Q9H0T7 212 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 DPH5Q9H2P9 285 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 NOL11Q9H8H0 719 aaKnown RBP11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 C6orf203Q9P0P8 240 aaPredicted RBP11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 SENP1Q9P0U3 644 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 SNX6Q9UNH7 406 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 SLC12A4Q9UP95 1085 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 RNF11Q9Y3C5 154 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PCDHA9Q9Y5H5 950 aa11.14□□□□□ -0.63
HLA-DQB3-203ENST00000425319 ITPR3Q14573 2671 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 MTORP42345 2549 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 ZNF407Q9C0G0 2248 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FRG2CA6NGY1 282 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 KDM4EB2RXH2 506 aaPredicted RBP11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 KLHL2O95198 593 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 IFNA2P01563 188 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PPP3CBP16298 524 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 DPP4P27487 766 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 ALDH9A1P49189 494 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 STARP49675 285 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FAM27E3Q08E93 113 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 NNATQ16517 81 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PRICKLE4Q2TBC4 344 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 CMC1Q7Z7K0 106 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 CREG2Q8IUH2 290 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 OR52R1Q8NGF1 315 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FBF1Q8TES7 1133 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 KCTD4Q8WVF5 259 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 HGDQ93099 445 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 GFM2Q969S9 779 aaKnown RBP11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 KLHL29Q96CT2 875 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 ERP27Q96DN0 273 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PERPQ96FX8 193 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 COX4I2Q96KJ9 171 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 WFIKKN1Q96NZ8 548 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 NTMT1Q9BV86 223 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 KLHL28Q9NXS3 571 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 TAS2R9Q9NYW1 312 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PROCRQ9UNN8 238 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 OR10H1Q9Y4A9 318 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 TESMINQ9Y4I5 508 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 NF1P21359 2839 aa11.13□□□□□ -0.63
HLA-DQB3-203ENST00000425319 A0A096LPK6 155 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 A0A1W2PNV4 684 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 TO15178 435 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 TNFRSF21O75509 655 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PLGP00747 810 aaPredicted RBP11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 CLPSP04118 112 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 TP53P04637 393 aaPredicted RBP11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 C2P06681 752 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FESP07332 822 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 CT62P0C5K7 136 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 FCGR2AP12318 317 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 ZNF708P17019 499 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 TBXA2RP21731 343 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 CRYGSP22914 178 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 CNTFP26441 200 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 MPIP34949 423 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 MAGEA4P43358 317 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 SLCO1A2P46721 670 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PNLIPRP2P54317 469 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PSMD4P55036 377 aaKnown RBP11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 NR1H2P55055 460 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 PLTPP55058 493 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 HMGCS1Q01581 520 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 UAP1Q16222 522 aaPredicted RBP11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 SGO1Q5FBB7 561 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 DCST1Q5T197 706 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 MROH9Q5TGP6 573 aa11.12□□□□□ -0.63
HLA-DQB3-203ENST00000425319 GTF2IRD2BQ6EKJ0 949 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms