RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 FBXW10Q5XX13 1052 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 LCN10Q6JVE6 187 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 RNF111Q6ZNA4 994 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 LANCL3Q6ZV70 420 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 PATL1Q86TB9 770 aaKnown RBP15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 KRT73Q86Y46 540 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 EID3Q8N140 333 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 COX18Q8N8Q8 333 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 GIMAP5Q96F15 307 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 TMEM19Q96HH6 336 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 FBXL20Q96IG2 436 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 RNF145Q96MT1 663 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 SPSB2Q99619 263 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 OR10A5Q9H207 317 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 SERHL2Q9H4I8 314 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 S100A14Q9HCY8 104 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 ADPRHL2Q9NX46 363 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 ANAPC2Q9UJX6 822 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 ANGPTL2Q9UKU9 493 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 AURKCQ9UQB9 309 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 HEMK1Q9Y5R4 338 aaPredicted RBP15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 V9GYQ6 96 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 KNTC1P50748 2209 aa15.96■□□□□ 0.15
CCDC28B-202ENST00000421922 TCRBV3S1A0A5B6 114 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 TTC36A6NLP5 189 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 TM4SF5O14894 197 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 ZNF682O95780 498 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 FUT7Q11130 342 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 FAM98BQ52LJ0 330 aaKnown RBP15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 SFT2D3Q587I9 215 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 ANKRD37Q7Z713 158 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 BBS10Q8TAM1 723 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC2A12Q8TD20 617 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 GPR151Q8TDV0 419 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 ADAMTS14Q8WXS8 1223 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 ZNF607Q96SK3 696 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 STACQ99469 402 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 UGT2B28Q9BY64 529 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 B3GNT4Q9C0J1 378 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 TRIM45Q9H8W5 580 aaPredicted RBP15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 POLR1BQ9H9Y6 1135 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 FOLH1BQ9HBA9 442 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 FOXJ2Q9P0K8 574 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 ZNF639Q9UID6 485 aa15.95■□□□□ 0.14
CCDC28B-202ENST00000421922 PCDH17O14917 1159 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 BAG2O95816 211 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 AK1P00568 194 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 IGHEP01854 428 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 ACP2P11117 423 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 TCN2P20062 427 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SDHBP21912 280 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 KDELR2P33947 212 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 CLCN2P51788 898 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 RPS15P62841 145 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 TBCELQ5QJ74 424 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 HLA-DQA1Q5Y7H0 255 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 WDR53Q7Z5U6 358 aaPredicted RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 ENDOVQ8N8Q3 282 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 MORN4Q8NDC4 146 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 OR52E4Q8NGH9 312 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 PTPMT1Q8WUK0 201 aaPredicted RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC38A5Q8WUX1 472 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 LZICQ8WZA0 190 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 CDS1Q92903 461 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SENP5Q96HI0 755 aaPredicted RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 LPAR4Q99677 370 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 PIGUQ9H490 435 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 YY1AP1Q9H869 796 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 AKIRIN1Q9H9L7 192 aaPredicted RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 DUSP22Q9NRW4 184 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 CNOT1A5YKK6 2376 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 MAP1BP46821 2468 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 A0A1W2PNU3 283 aaPredicted RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 STMND1H3BQB6 276 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 HRKO00198 91 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 CNOT3O75175 753 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 RAB40ALP0C0E4 278 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 TFPTP0C1Z6 253 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 HOXB6P17509 224 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 CD82P27701 267 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 GABRA3P34903 492 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 FOXL2P58012 376 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 POU6F2P78424 691 aaPredicted RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 CHRNB3Q05901 458 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SNCBQ16143 134 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SYPL1Q16563 259 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 DUSP5Q16690 384 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC29A4Q7RTT9 530 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 CPEB2Q7Z5Q1 589 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 NLGN4XQ8N0W4 816 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC16A11Q8NCK7 471 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SIMC1Q8NDZ2 872 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 NLGN4YQ8NFZ3 816 aaPredicted RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 OR2Y1Q8NGV0 311 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC46A1Q96NT5 459 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SEPHS2Q99611 448 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SPATA5L1Q9BVQ7 753 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 RASSF4Q9H2L5 321 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 RNPEPL1Q9HAU8 725 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 Q9N2J8 555 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms