RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ZDHHC2Q9UIJ5 367 aa11.81□□□□□ -0.52
LINC00339-202ENST00000416769 PCDHGA11Q9Y5H2 935 aa11.81□□□□□ -0.52
LINC00339-202ENST00000416769 MED12LQ86YW9 2145 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 A0A088AWK7 358 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 SERTM1A2A2V5 107 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 HSPB2A8KAH6 182 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 AZIN1O14977 448 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 TRIM3O75382 744 aaPredicted RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 LYPLA1O75608 230 aaPredicted RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 RAF1P04049 648 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 UROSP10746 265 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 GABRA1P14867 456 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 ZNF10P21506 573 aaPredicted RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 GDF1P27539 372 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 SSR2P43308 183 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 RPL14P50914 215 aaKnown RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 OCRLQ01968 901 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 SLAMF1Q13291 335 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 DDX39BQ13838 428 aaKnown RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 SERTAD2Q14140 314 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 ZNF267Q14586 743 aaPredicted RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 EBPQ15125 230 aaKnown RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 HSPB2Q16082 182 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 CPSF6Q16630 551 aaKnown RBP eCLIP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 EIPR1Q53HC9 387 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 C10orf62Q5T681 223 aaPredicted RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 PRR22Q8IZ63 422 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 CIARTQ8N365 385 aaPredicted RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 METTL6Q8TCB7 284 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 FAM222BQ8WU58 562 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 REPS1Q96D71 796 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 MBD6Q96DN6 1003 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 C7orf26Q96N11 449 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 DGAT2Q96PD7 388 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 KCNC2Q96PR1 638 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 TIMP4Q99727 224 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 DOHHQ9BU89 302 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 SHCBP1LQ9BZQ2 653 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 WWTR1Q9GZV5 400 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 SLC24A3Q9HC58 644 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 B4GALT7Q9UBV7 327 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 BOKQ9UMX3 212 aaPredicted RBP11.8□□□□□ -0.52
LINC00339-202ENST00000416769 SNX6Q9UNH7 406 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 TRAF6Q9Y4K3 522 aa11.8□□□□□ -0.52
LINC00339-202ENST00000416769 RTTNQ86VV8 2226 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 ROS1P08922 2347 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 KIAA1324LA8MWY0 1029 aaPredicted RBP11.79□□□□□ -0.52
LINC00339-202ENST00000416769 EEF1E1-BLOC1S5C9J1V9 151 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 POLR3GO15318 223 aaPredicted RBP11.79□□□□□ -0.52
LINC00339-202ENST00000416769 EEF1E1O43324 174 aaKnown RBP11.79□□□□□ -0.52
LINC00339-202ENST00000416769 TMPRSS11DO60235 418 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 EEDO75530 441 aaKnown RBP11.79□□□□□ -0.52
LINC00339-202ENST00000416769 TRAPPC6AO75865 159 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 SCELO95171 688 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 EPPINO95925 133 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 KRT6AP02538 564 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 KRT6BP04259 564 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 HMOX2P30519 316 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 SERPINB1P30740 379 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 SSTR4P31391 388 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 PIK3CBP42338 1070 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 KRT6CP48668 564 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 FOXF2Q12947 444 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 DAZAP2Q15038 168 aaPredicted RBP11.79□□□□□ -0.52
LINC00339-202ENST00000416769 UGT3A2Q3SY77 523 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 FBXL19-AS1Q494R0 122 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 SH2D4BQ5SQS7 431 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 TTC19Q6DKK2 380 aaPredicted RBP11.79□□□□□ -0.52
LINC00339-202ENST00000416769 RNF165Q6ZSG1 346 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 MTERF4Q7Z6M4 381 aaKnown RBP11.79□□□□□ -0.52
LINC00339-202ENST00000416769 PRIMA1Q86XR5 153 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 MYLK4Q86YV6 388 aaPredicted RBP11.79□□□□□ -0.52
LINC00339-202ENST00000416769 LIX1Q8N485 282 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 CDYL2Q8N8U2 506 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 C9orf106Q8NAJ2 232 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 OR7G3Q8NG95 312 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 WDR20Q8TBZ3 569 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 SLC22A8Q8TCC7 542 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 FBXL20Q96IG2 436 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 GNRHR2Q96P88 292 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 TRIB1Q96RU8 372 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 TBCDQ9BTW9 1192 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 ZNF717Q9BY31 904 aaPredicted RBP11.79□□□□□ -0.52
LINC00339-202ENST00000416769 PRM3Q9NNZ6 103 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 TNFRSF12AQ9NP84 129 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 ACKR4Q9NPB9 350 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 TIMM22Q9Y584 194 aa11.79□□□□□ -0.52
LINC00339-202ENST00000416769 FBN3Q75N90 2809 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 C2orf72A6NCS6 295 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 TUBAL3A6NHL2 446 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 SLCO1B7G3V0H7 640 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 FOXE1O00358 373 aaPredicted RBP11.78□□□□□ -0.52
LINC00339-202ENST00000416769 MANBAO00462 879 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 PLPP1O14494 284 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 DVL2O14641 736 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 ULK1O75385 1050 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 CRCPO75575 148 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 CHEK2O96017 543 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 GBAP04062 536 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 CT62P0C5K7 136 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms