RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 MOCOSQ96EN8 888 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 TCTN2Q96GX1 697 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 SLC41A3Q96GZ6 507 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 R3HDMLQ9H3Y0 253 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 DHDHQ9UQ10 334 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 SLC19A2O60779 497 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 CELP19835 753 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 PCGF2P35227 344 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 ETV4P43268 484 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 UBE2NP61088 152 aaKnown RBP16.37■□□□□ 0.21
PHRF1-202ENST00000413872 HERV-K104P61576 105 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 OR5K2Q8NHB8 316 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 ZNF675Q8TD23 568 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 TESCQ96BS2 214 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 TRNAU1APQ9NX07 287 aaKnown RBP16.37■□□□□ 0.21
PHRF1-202ENST00000413872 SCP2D1Q9UJQ7 156 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 PTRH2Q9Y3E5 179 aaKnown RBP16.37■□□□□ 0.21
PHRF1-202ENST00000413872 PCDHA9Q9Y5H5 950 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 SDC1P18827 310 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 GXYLT1Q4G148 440 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 UEVLDQ8IX04 471 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 AGBL5Q8NDL9 886 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 ELP5Q8TE02 316 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 URM1Q9BTM9 101 aaKnown RBP16.37■□□□□ 0.21
PHRF1-202ENST00000413872 SRA1Q9HD15 236 aaKnown RBP16.37■□□□□ 0.21
PHRF1-202ENST00000413872 ETAA1Q9NY74 926 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 PLOD2O00469 737 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 SEC14L5O43304 696 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 MT-ND2P03891 347 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 DCAF7P61962 342 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 RAB39AQ14964 217 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 ODF4Q2M2E3 257 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 WSCD2Q2TBF2 565 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 ZER1Q7Z7L7 766 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 GALNT10Q86SR1 603 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 CLEC1AQ8NC01 280 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 UHRF1Q96T88 793 aaPredicted RBP16.37■□□□□ 0.21
PHRF1-202ENST00000413872 TAS2R10Q9NYW0 307 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 MED11Q9P086 117 aa16.37■□□□□ 0.21
PHRF1-202ENST00000413872 A0A1B0GTW7 788 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 SH3D21A4FU49 640 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 MRPL3P09001 348 aaKnown RBP16.36■□□□□ 0.21
PHRF1-202ENST00000413872 ZNF43P17038 809 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 GGT2P36268 569 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 CPZQ66K79 652 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 CWF19L1Q69YN2 538 aaKnown RBP16.36■□□□□ 0.21
PHRF1-202ENST00000413872 TMPRSS9Q7Z410 1059 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 PLPP6Q8IY26 295 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.36■□□□□ 0.21
PHRF1-202ENST00000413872 HAVCR2Q8TDQ0 301 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 EPHX3Q9H6B9 360 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 CNOT11Q9UKZ1 510 aaKnown RBP16.36■□□□□ 0.21
PHRF1-202ENST00000413872 IGLV3-10A0A075B6K4 115 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 HHLA1C9JL84 531 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 SLITRK5O94991 958 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 SNAP29O95721 258 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 ZNF829Q3KNS6 432 aaPredicted RBP16.36■□□□□ 0.21
PHRF1-202ENST00000413872 LRRC69Q6ZNQ3 347 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 PROKR1Q8TCW9 393 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 ELSPBP1Q96BH3 223 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 BORCS8Q96FH0 119 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 TRPV4Q9HBA0 871 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 PRSS21Q9Y6M0 314 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 MROH6A6NGR9 719 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 HOXC11O43248 304 aaPredicted RBP16.36■□□□□ 0.21
PHRF1-202ENST00000413872 PTNP21246 168 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 HIST1H1TP22492 207 aaPredicted RBP16.36■□□□□ 0.21
PHRF1-202ENST00000413872 MC3RP41968 323 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 ARRDC3Q96B67 414 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 ATOH8Q96SQ7 321 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 ARNTLO00327 626 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 AFF3P51826 1226 aaKnown RBP16.36■□□□□ 0.21
PHRF1-202ENST00000413872 MLLT10P55197 1068 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 TRNP1Q6NT89 227 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 CMAHPQ9Y471 501 aa16.36■□□□□ 0.21
PHRF1-202ENST00000413872 SGK494L7N484 410 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 NDUFB2O95178 105 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 PRKCDQ05655 676 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 OR9A2Q8NGT5 310 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 NAALAD2Q9Y3Q0 740 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 LTBP4Q8N2S1 1624 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 FOXE1O00358 373 aaPredicted RBP16.35■□□□□ 0.21
PHRF1-202ENST00000413872 DLGAP1O14490 977 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 FESP07332 822 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 GMPRP36959 345 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 SCGB2B2Q4G0G5 96 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 CARD17Q5XLA6 110 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 HMBOX1Q6NT76 420 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 RTN4RL1Q86UN2 441 aaPredicted RBP16.35■□□□□ 0.21
PHRF1-202ENST00000413872 MS4A15Q8N5U1 240 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 SFXN2Q96NB2 322 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 RTP3Q9BQQ7 232 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 SLC30A2Q9BRI3 323 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 CCDC59Q9P031 241 aaKnown RBP16.35■□□□□ 0.21
PHRF1-202ENST00000413872 CSN2P05814 226 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 DUSP6Q16828 381 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 TMEM52BQ4KMG9 183 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 PIGGQ5H8A4 983 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 SPIN3Q5JUX0 258 aa16.35■□□□□ 0.21
PHRF1-202ENST00000413872 SLC18B1Q6NT16 456 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms