RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 ZNF740Q8NDX6 193 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 BAHD1Q8TBE0 780 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 GIPC3Q8TF64 312 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 KAT2AQ92830 837 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 NACC2Q96BF6 587 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 RRNAD1Q96FB5 475 aaKnown RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 MS4A4EQ96PG1 132 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 PRRG4Q9BZD6 226 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 HOXD1Q9GZZ0 328 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 IL1RAPQ9NPH3 570 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 WDR37Q9Y2I8 494 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 SPIN1Q9Y657 262 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 CABIN1Q9Y6J0 2220 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 PATJQ8NI35 1801 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 CIB4A0PJX0 185 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 FAM86C2PA6NEL3 165 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 PIP5K1CO60331 668 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 CPNE3O75131 537 aaKnown RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 CCNB2O95067 398 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 SAGP10523 405 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 STAT5AP42229 794 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 CASP9P55211 416 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 ZNF551Q7Z340 670 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 OR9A4Q8NGU2 314 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 WDR36Q8NI36 951 aaKnown RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 IPCEF1Q8WWN9 437 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 C3orf30Q96M34 536 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 ACTRT3Q9BYD9 372 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 MKKSQ9NPJ1 570 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 GPC6Q9Y625 555 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 NOBOXO60393 691 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 CKMT2P17540 419 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 BCKDHBP21953 392 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 RAB15P59190 212 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 PLCXD2Q0VAA5 305 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 TMEM44Q2T9K0 475 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 PLK5Q496M5 336 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 FLYWCH1Q4VC44 716 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 TRIQKQ629K1 86 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 LCN8Q6JVE9 175 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 CDC73Q6P1J9 531 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 TMEM71Q6P5X7 295 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 ABHD17CQ6PCB6 329 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 MCEMP1Q8IX19 187 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 VWA5B2Q8N398 1253 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 ZCCHC7Q8N3Z6 543 aaKnown RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 PMEPA1Q969W9 287 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 TMCO6Q96DC7 493 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 AURKBQ96GD4 344 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 JSRP1Q96MG2 331 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 OR6C1Q96RD1 312 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 VPS25Q9BRG1 176 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 ASIC5Q9NY37 505 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 PDP1Q9P0J1 537 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 CRNNQ9UBG3 495 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-211ENST00000413186 PFDN2Q9UHV9 154 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 ERGIC3Q9Y282 383 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 GSTK1Q9Y2Q3 226 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 MMACHCQ9Y4U1 282 aa8.05□□□□□ -1.12
SYNE1-211ENST00000413186 ELOA3DA6NLF2 546 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-211ENST00000413186 H0YAE9 185 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 STX11O75558 287 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 HPRP00739 348 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 ARFIP1P53367 373 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 CDH12P55289 794 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 TNFRSF17Q02223 184 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 BNIP3Q12983 259 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 ELOA3BQ3SY89 546 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 FAM98AQ8NCA5 519 aaKnown RBP8.04□□□□□ -1.12
SYNE1-211ENST00000413186 ELOA3Q8NG57 546 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 SFXN5Q8TD22 340 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 RAB8BQ92930 207 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 MVB12AQ96EY5 273 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 EPYCQ99645 322 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 PLAC1Q9HBJ0 212 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 STARD5Q9NSY2 213 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 POMT2Q9UKY4 750 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 EDARQ9UNE0 448 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 PTRH2Q9Y3E5 179 aaKnown RBP8.04□□□□□ -1.12
SYNE1-211ENST00000413186 PCDHA9Q9Y5H5 950 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 MCIDASD6RGH6 385 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 NME6O75414 186 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-211ENST00000413186 PRKD3O94806 890 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 OR12D1P0DN82 309 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 OTX2P32243 289 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 BCL6P41182 706 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 ZNF423Q2M1K9 1284 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 NKAIN2Q5VXU1 208 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 PMS2CLQ68D20 193 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 LIN54Q6MZP7 749 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 Q6ZSR9 355 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 PEG10Q86TG7 708 aaKnown RBP8.04□□□□□ -1.12
SYNE1-211ENST00000413186 SLC15A3Q8IY34 581 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 ZZZ3Q8IYH5 903 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 MARVELD2Q8N4S9 558 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 PHOSPHO1Q8TCT1 267 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 PYURFQ96I23 114 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 GUCD1Q96NT3 240 aa8.04□□□□□ -1.12
SYNE1-211ENST00000413186 PKP2Q99959 881 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms