RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 C6orf136Q5SQH8 315 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 FAM124AQ86V42 546 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 UHRF1Q96T88 793 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-206ENST00000409809 IL12RB2Q99665 862 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 FBXO8Q9NRD0 319 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 TMEM200CA6NKL6 621 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 SRPX2O60687 465 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-206ENST00000409809 BAMBIQ13145 260 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 MRPL49Q13405 166 aaKnown RBP12.31□□□□□ -0.44
COL6A3-206ENST00000409809 NOL9Q5SY16 702 aaKnown RBP12.31□□□□□ -0.44
COL6A3-206ENST00000409809 OR4M1Q8NGD0 313 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 SALL4Q9UJQ4 1053 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 UBE2Q2LH0YL09 131 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 CDK14O94921 469 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF30P17039 623 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 MAKP20794 623 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 PBX2P40425 430 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 GCGRP47871 477 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 NUMBP49757 651 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 ENTHD1Q8IYW4 607 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 RBMXL1Q96E39 390 aaKnown RBP12.31□□□□□ -0.44
COL6A3-206ENST00000409809 RNF170Q96K19 258 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 DKKL1Q9UK85 242 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 ASXL3Q9C0F0 2248 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 CPED1A4D0V7 1026 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 TAAR5O14804 337 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 RAC2P15153 192 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 ERVMER34-1Q9H9K5 563 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 TAS2R16Q9NYV7 291 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 NCDNQ9UBB6 729 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 FBXW2Q9UKT8 454 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF850A8MQ14 1090 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 RAB3DO95716 219 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 HBMQ6B0K9 141 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF559Q9BR84 538 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 ACP6Q9NPH0 428 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 MSI1O43347 362 aaKnown RBP12.31□□□□□ -0.44
COL6A3-206ENST00000409809 AQP2P41181 271 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 INHBEP58166 350 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 MFGE8Q08431 387 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-206ENST00000409809 OTOP3Q7RTS5 596 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 LIX1LQ8IVB5 337 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 C1orf123Q9NWV4 160 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 M0QZK8 103 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 GGCTO75223 188 aaKnown RBP12.31□□□□□ -0.44
COL6A3-206ENST00000409809 C4orf32Q8N8J7 132 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 LIN7BQ9HAP6 207 aa12.31□□□□□ -0.44
COL6A3-206ENST00000409809 EEF1E1-BLOC1S5C9J1V9 151 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 PIRTP0C851 137 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 STAG3L2P0CL84 134 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 FABP6P51161 128 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 MELKQ14680 651 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 KIAA1324Q6UXG2 1013 aaKnown RBP12.3□□□□□ -0.44
COL6A3-206ENST00000409809 LCN9Q8WX39 176 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 TSGA13Q96PP4 275 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 CTPS2Q9NRF8 586 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 MED17Q9NVC6 651 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF586Q9NXT0 402 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 PYCR1P32322 319 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 LSSP48449 732 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 PRAMEF14Q5SWL7 426 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 SYT13Q7L8C5 426 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF461Q8TAF7 563 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 GPR83Q9NYM4 423 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 TCRBV3S1A0A5B6 114 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 STSP08842 583 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 MC3RP41968 323 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 CELF3Q5SZQ8 465 aaKnown RBP12.3□□□□□ -0.44
COL6A3-206ENST00000409809 MRPL17Q9NRX2 175 aaKnown RBP12.3□□□□□ -0.44
COL6A3-206ENST00000409809 PRRC2BQ5JSZ5 2229 aaKnown RBP12.3□□□□□ -0.44
COL6A3-206ENST00000409809 TBC1D3BA6NDS4 549 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 SYN3O14994 580 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 PCGF2P35227 344 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 ITPK1Q13572 414 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 ITPRIPL2Q3MIP1 535 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 RD3Q7Z3Z2 195 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 GOLGA7Q7Z5G4 137 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 SLC43A2Q8N370 569 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 OR13F1Q8NGS4 319 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 OR2T4Q8NH00 348 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 VNN3Q9NY84 501 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 LCKP06239 509 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 ARSBP15848 533 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 KDELR2P33947 212 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 CAV2P51636 162 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 OPCMLQ14982 345 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 IQCJQ1A5X6 159 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 CHST9Q7L1S5 443 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 AMZ2Q86W34 360 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 CTRCQ99895 268 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 CCM2Q9BSQ5 444 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 FN3KRPQ9HA64 309 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 SPANXN4Q5MJ08 99 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 PLEKHS1Q5SXH7 462 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 H3F3CQ6NXT2 135 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 GPC2Q8N158 579 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 RANBP9Q96S59 729 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 SPATA31C2B4DYI2 1134 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 C17orf112F2Z3M2 114 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 SOX14O95416 240 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms