RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SUMF1Q8NBK3 374 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 APOBEC4Q8WW27 367 aaKnown RBP13.11□□□□□ -0.31
GPNMB-203ENST00000409458 TRNT1Q96Q11 434 aaKnown RBP13.11□□□□□ -0.31
GPNMB-203ENST00000409458 EDEM2Q9BV94 578 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 BTBD2Q9BX70 525 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 QRSL1Q9H0R6 528 aaKnown RBP13.11□□□□□ -0.31
GPNMB-203ENST00000409458 SLC38A1Q9H2H9 487 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 THSD1Q9NS62 852 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 SLC22A11Q9NSA0 550 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 EXD2Q9NVH0 621 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 NDUFAF4Q9P032 175 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 CTSFQ9UBX1 484 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 SEC14L3Q9UDX4 400 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 BAG5Q9UL15 447 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 LIPT1Q9Y234 373 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 SH3GLB1Q9Y371 365 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 AP4B1Q9Y6B7 739 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 U3KQV3 271 aa13.11□□□□□ -0.31
GPNMB-203ENST00000409458 IGKV3D-11A0A0A0MRZ8 115 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 A0A0G2JPF8 293 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 HNRNPCL2B2RXH8 293 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 HNRNPCL3B7ZW38 293 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 G3V2T6 193 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 DLGAP1O14490 977 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 GDF9O60383 454 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 E2F6O75461 281 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 SERPINB7O75635 380 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 AGR2O95994 175 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 IFNA16P05015 189 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 FESP07332 822 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 ALOX5P09917 674 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 HNRNPCL4P0DMR1 293 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 ETS2P15036 469 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 CSTF2P33240 577 aaKnown RBP eCLIP13.1□□□□□ -0.31
GPNMB-203ENST00000409458 MAP3K8P41279 467 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 KCNJ5P48544 419 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 HSPA13P48723 471 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 PGDP52209 483 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 HPCAP84074 193 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 CHRNEQ04844 493 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 TRA2AQ13595 282 aaKnown RBP eCLIP13.1□□□□□ -0.31
GPNMB-203ENST00000409458 ZNF267Q14586 743 aaPredicted RBP13.1□□□□□ -0.31
GPNMB-203ENST00000409458 PUM1Q14671 1186 aaKnown RBP eCLIP13.1□□□□□ -0.31
GPNMB-203ENST00000409458 OTUD3Q5T2D3 398 aaPredicted RBP13.1□□□□□ -0.31
GPNMB-203ENST00000409458 MLIPQ5VWP3 458 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 ZCCHC12Q6PEW1 402 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 COMTD1Q86VU5 262 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 PPP1R3BQ86XI6 285 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 KRT73Q86Y46 540 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 PRSS58Q8IYP2 241 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 SVOPLQ8N434 492 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 BMPERQ8N8U9 685 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 OR5K1Q8NHB7 308 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 PIK3R3Q92569 461 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 HOXB13Q92826 284 aaPredicted RBP13.1□□□□□ -0.31
GPNMB-203ENST00000409458 CTRCQ99895 268 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 PELOQ9BRX2 385 aaKnown RBP13.1□□□□□ -0.31
GPNMB-203ENST00000409458 CNPPD1Q9BV87 410 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 PIGUQ9H490 435 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 MKKSQ9NPJ1 570 aaPredicted RBP13.1□□□□□ -0.31
GPNMB-203ENST00000409458 C8orf4Q9NR00 106 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 RAB26Q9ULW5 256 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 ERVK-19Q9WJR5 959 aa13.1□□□□□ -0.31
GPNMB-203ENST00000409458 FCMRO60667 390 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 CLPSP04118 112 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 YAP1P46937 504 aaKnown RBP13.09□□□□□ -0.31
GPNMB-203ENST00000409458 EMDP50402 254 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 SPEM2Q0P670 501 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 DAG1Q14118 895 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 LAPTM4AQ15012 233 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 ARHGAP11BQ3KRB8 267 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 CCNJQ5T5M9 372 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 SHQ1Q6PI26 577 aaKnown RBP13.09□□□□□ -0.31
GPNMB-203ENST00000409458 FRRS1Q6ZNA5 592 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 STK32CQ86UX6 486 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 ZDHHC13Q8IUH4 622 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 MAGEE2Q8TD90 523 aaPredicted RBP13.09□□□□□ -0.31
GPNMB-203ENST00000409458 RASSF5Q8WWW0 418 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 CLIP3Q96DZ5 547 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 ZNF300Q96RE9 604 aaPredicted RBP13.09□□□□□ -0.31
GPNMB-203ENST00000409458 STACQ99469 402 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 BARD1Q99728 777 aaKnown RBP13.09□□□□□ -0.31
GPNMB-203ENST00000409458 LMF2Q9BU23 707 aaKnown RBP13.09□□□□□ -0.31
GPNMB-203ENST00000409458 AMBRA1Q9C0C7 1298 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 FOLH1BQ9HBA9 442 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 DUSP22Q9NRW4 184 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 PNO1Q9NRX1 252 aaKnown RBP13.09□□□□□ -0.31
GPNMB-203ENST00000409458 CALML5Q9NZT1 146 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 DTX4Q9Y2E6 619 aa13.09□□□□□ -0.31
GPNMB-203ENST00000409458 ASCC3Q8N3C0 2202 aaKnown RBP13.09□□□□□ -0.31
GPNMB-203ENST00000409458 C17orf105B2RV13 164 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 J3KTA2 159 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 DPM1O60762 260 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 EPPINO95925 133 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 FGF5P12034 268 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 RRM2P31350 389 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 GALNSP34059 522 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 ALDH3A2P51648 485 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 FOXL2P58012 376 aa13.08□□□□□ -0.31
GPNMB-203ENST00000409458 FUT7Q11130 342 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms