RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 GPR55Q9Y2T6 319 aaPredicted RBP17.63■□□□□ 0.41
SMARCB1-204ENST00000407422 SPG11Q96JI7 2443 aa17.63■□□□□ 0.41
SMARCB1-204ENST00000407422 KDM4EB2RXH2 506 aaPredicted RBP17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 GABRA1P14867 456 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 KRT4P19013 534 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 PTGDSP41222 190 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 ZFP36L2P47974 494 aaKnown RBP17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 CORO7P57737 925 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 DNAJB13P59910 316 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 DCAF7P61962 342 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 CRYZQ08257 329 aaKnown RBP17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 TOMM20Q15388 145 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 EIPR1Q53HC9 387 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 CFAP157Q5JU67 520 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 TIGD3Q6B0B8 471 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 ANGPTL8Q6UXH0 198 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 NUP54Q7Z3B4 507 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 CCDC63Q8NA47 563 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 TMBIM1Q969X1 311 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 C14orf79Q96F83 325 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 TIMP4Q99727 224 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 SLC6A5Q9Y345 797 aa17.62■□□□□ 0.41
SMARCB1-204ENST00000407422 FRG2CA6NGY1 282 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 COPEO14579 308 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 TO15178 435 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 ICOSLGO75144 302 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 HOXD4P09016 255 aaPredicted RBP17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 CT45A8P0DMV1 189 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 CT45A9P0DMV2 189 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 CPA3P15088 417 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 PTPN6P29350 595 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 WNT3P56703 355 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 TLE4Q04727 773 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 ZNF763Q0D2J5 394 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 CEBPEQ15744 281 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 CT45A2Q5DJT8 189 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 TRIM46Q7Z4K8 759 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 OR7G2Q8NG99 324 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 PPCSQ9HAB8 311 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 GIMAP4Q9NUV9 329 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 POLR3HQ9Y535 204 aaPredicted RBP17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 PCDHGB3Q9Y5G1 929 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 CRCPO75575 148 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 DDCP20711 480 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 C2orf80Q0P641 193 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 IMPG1Q17R60 797 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 WIPI1Q5MNZ9 446 aaPredicted RBP17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 CLEC6AQ6EIG7 209 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 TMEM81Q6P7N7 255 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 SAMD14Q8IZD0 417 aaPredicted RBP17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 OR1J4Q8NGS1 313 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 OR2W6PQ8NHA6 318 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 RDH11Q8TC12 318 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 VSTM2LQ96N03 204 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 BTBD9Q96Q07 612 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 ANKZF1Q9H8Y5 726 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 KLRF1Q9NZS2 232 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 PTGDR2Q9Y5Y4 395 aa17.61■□□□□ 0.41
SMARCB1-204ENST00000407422 CDH16O75309 829 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 BCAS2O75934 225 aaPredicted RBP17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 ELAVL4P26378 380 aaKnown RBP17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 NAA20P61599 178 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 SLC18A2Q05940 514 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 DCST1Q5T197 706 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 VASNQ6EMK4 673 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 FAM71E1Q6IPT2 247 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 SLC30A6Q6NXT4 461 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 NPSR1Q6W5P4 371 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 YRDCQ86U90 279 aaKnown RBP17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 C10orf107Q8IVU9 208 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 DMRTC2Q8IXT2 367 aaPredicted RBP17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 ERP27Q96DN0 273 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 BBS4Q96RK4 519 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 OSBPL11Q9BXB4 747 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 MAPRE3Q9UPY8 281 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 EXO1Q9UQ84 846 aaKnown RBP17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 CCL27Q9Y4X3 112 aa17.6■□□□□ 0.41
SMARCB1-204ENST00000407422 PRAMEF25A6NGN4 478 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 MYO1GB0I1T2 1018 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 SNPHO15079 494 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 PLOD3O60568 738 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 ERN1O75460 977 aaKnown RBP17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 REM1O75628 298 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 JUNP05412 331 aaKnown RBP17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 BMP7P18075 431 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 MPIP34949 423 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 GSTM5P46439 218 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 SNTA1Q13424 505 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 ERCC6LQ2NKX8 1250 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 ACSF3Q4G176 576 aaPredicted RBP17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 RIPPLY2Q5TAB7 128 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 LIPMQ5VYY2 423 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 FAM9CQ8IZT9 166 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 WDSUB1Q8N9V3 476 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 NAXEQ8NCW5 288 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 FAM83FQ8NEG4 500 aaPredicted RBP17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 COL21A1Q96P44 957 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 ADOQ96SZ5 270 aa17.59■□□□□ 0.41
SMARCB1-204ENST00000407422 UGT2B28Q9BY64 529 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms