RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 CRYBA2P53672 197 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 LINC01547P58512 204 aaPredicted RBP4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 RBBP4Q09028 425 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 ALX1Q15699 326 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 HAGHQ16775 308 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 ZNF876PQ49A33 203 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 CCDC152Q4G0S7 254 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 FAM76BQ5HYJ3 339 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 LDLRAP1Q5SW96 308 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 ATL3Q6DD88 541 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 FAM53AQ6NSI3 398 aaPredicted RBP4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 FAM173BQ6P4H8 233 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 LRRC8BQ6P9F7 803 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 GOLGA7Q7Z5G4 137 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 PTAR1Q7Z6K3 402 aaPredicted RBP4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 LCA5Q86VQ0 697 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 ZNF573Q86YE8 665 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 ZNF540Q8NDQ6 660 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 GIPC3Q8TF64 312 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 ZNF486Q96H40 463 aaPredicted RBP4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 GMPPAQ96IJ6 420 aaPredicted RBP4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 F2RL3Q96RI0 385 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 USP28Q96RU2 1077 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 NODALQ96S42 347 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 NDUFAF3Q9BU61 184 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 ZNF416Q9BWM5 594 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 RPAP3Q9H6T3 665 aaPredicted RBP4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 COQ10BQ9H8M1 238 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 AATFQ9NY61 560 aaKnown RBP eCLIP4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 CFAP45Q9UL16 551 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 CSNK1G3Q9Y6M4 447 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 NEDD4P46934 1319 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 WDR19Q8NEZ3 1342 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 ZNF532Q9HCE3 1301 aa4.09□□□□□ -1.75
HMGB3P18-201ENST00000406327 PAPPAQ13219 1627 aa4.09□□□□□ -1.76
HMGB3P18-201ENST00000406327 NHSL1Q5SYE7 1610 aa4.09□□□□□ -1.76
HMGB3P18-201ENST00000406327 GOLGA6L4A6NEF3 574 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 SHISA7A6NL88 538 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 ANKRD30BLA7E2S9 258 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 SRRM4A7MD48 611 aaKnown RBP4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 H3BQV1 296 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 MAPK13O15264 365 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 TSPAN2O60636 221 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 LRP6O75581 1613 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 CD48P09326 243 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 GNB3P16520 340 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 FCGR2BP31994 310 aaPredicted RBP4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 FCGR2CP31995 323 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 NPY2RP49146 381 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 HAND2P61296 217 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 BTG1P62324 171 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 HERVK_113P63132 956 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 ERVK-8P63133 956 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 DHODHQ02127 395 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 ANKDD1AQ495B1 522 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 RIC1Q4ADV7 1423 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 TMEM41BQ5BJD5 291 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 AHDC1Q5TGY3 1603 aaPredicted RBP4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 Q6ZSR9 355 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 ADGRD2Q7Z7M1 963 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 RANBP3LQ86VV4 465 aaPredicted RBP4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 AMZ2Q86W34 360 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 UBR2Q8IWV8 1755 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 DCLK2Q8N568 766 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 GMCL1P1Q8NEA9 526 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 RTL9Q8NET4 1388 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 OR10G7Q8NGN6 311 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 LIPHQ8WWY8 451 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 MRPL24Q96A35 216 aaKnown RBP4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 PNPLA2Q96AD5 504 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 PRAC1Q96KF2 57 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 ZNF396Q96N95 335 aaPredicted RBP4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 CARD6Q9BX69 1037 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 ERVK-6Q9BXR3 956 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 DGCR6LQ9BY27 220 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 WDR13Q9H1Z4 485 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 ACTR8Q9H981 624 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 POLD4Q9HCU8 107 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 B3GAT2Q9NPZ5 323 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 SALL1Q9NSC2 1324 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 CENPMQ9NSP4 180 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 DDX19AQ9NUU7 478 aaKnown RBP4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 ATAD3AQ9NVI7 634 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 CGNQ9P2M7 1197 aaKnown RBP4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 ATXN10Q9UBB4 475 aa4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 NIP7Q9Y221 180 aaKnown RBP eCLIP4.08□□□□□ -1.76
HMGB3P18-201ENST00000406327 LAMB4A4D0S4 1761 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 COL14A1Q05707 1796 aaKnown RBP4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 ARFGEF2Q9Y6D5 1785 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 ZMYM6O95789 1325 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 KLF18A0A0U1RQI7 1052 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 MEIOCA2RUB1 952 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 PDXKO00764 312 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 NDUFA7O95182 113 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 EDNRAP25101 427 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 DPP4P27487 766 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 MMP12P39900 470 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 NAPAP54920 295 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 TRDNQ13061 729 aa4.07□□□□□ -1.76
HMGB3P18-201ENST00000406327 RIGQ13278 110 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms