RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MYBPC3Q14896 1274 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 GCNT6Q5T4J0 391 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 ATAD3BQ5T9A4 648 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 PLAG1Q6DJT9 500 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 ASRGL1Q7L266 308 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 C10orf111Q8N326 155 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 MIPOL1Q8TD10 442 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 CLPTM1LQ96KA5 538 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 ZNF583Q96ND8 569 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 CCNL2Q96S94 520 aaPredicted RBP16.77■□□□□ 0.28
SDC1-203ENST00000403076 ITPAQ9BY32 194 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 ALG2Q9H553 416 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 THUMPD1Q9NXG2 353 aaKnown RBP16.77■□□□□ 0.28
SDC1-203ENST00000403076 DKK4Q9UBT3 224 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 DTX4Q9Y2E6 619 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 TTC36A6NLP5 189 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 ZNF891A8MT65 544 aaPredicted RBP16.76■□□□□ 0.27
SDC1-203ENST00000403076 MASP2O00187 686 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 HMGN4O00479 90 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 NKX2-8O15522 239 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 DNAJA2O60884 412 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 PDE5AO76074 875 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 ZFAND5O76080 213 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 AGR2O95994 175 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 NUDT7P0C024 238 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 ACP2P11117 423 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 RNF4P78317 190 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 CEACAM7Q14002 265 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 ATP1A1-AS1Q5TC04 95 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 GPR155Q7Z3F1 870 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 SERPINA11Q86U17 422 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 SLC44A2Q8IWA5 706 aaPredicted RBP16.76■□□□□ 0.27
SDC1-203ENST00000403076 C9orf40Q8IXQ3 194 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 COX18Q8N8Q8 333 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 OR2T12Q8NG77 320 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 OR5L2Q8NGL0 311 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 THAP3Q8WTV1 239 aaPredicted RBP16.76■□□□□ 0.27
SDC1-203ENST00000403076 SLC35A4Q96G79 324 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 FER1L6-AS2Q96M78 137 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 VSTM2LQ96N03 204 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 LMF2Q9BU23 707 aaKnown RBP16.76■□□□□ 0.27
SDC1-203ENST00000403076 PIGUQ9H490 435 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 EXD2Q9NVH0 621 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 GMPR2Q9P2T1 348 aaKnown RBP16.76■□□□□ 0.27
SDC1-203ENST00000403076 OR10H1Q9Y4A9 318 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 PCDHGB3Q9Y5G1 929 aa16.76■□□□□ 0.27
SDC1-203ENST00000403076 PRORSD1PA6NEY8 169 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 GSTA4O15217 222 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 SOX30O94993 753 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 CELA2AP08217 269 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 ME2P23368 584 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 PPICP45877 212 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 CORO7P57737 925 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 DCAF7P61962 342 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 EBPQ15125 230 aaKnown RBP16.75■□□□□ 0.27
SDC1-203ENST00000403076 DUSP5Q16690 384 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 C16orf62Q7Z3J2 963 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 LGI4Q8N135 537 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 ZSCAN1Q8NBB4 408 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 FAM156AQ8NDB6 213 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 CDS1Q92903 461 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 GATA6Q92908 595 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 DCBLD2Q96PD2 775 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 STACQ99469 402 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 SPATA9Q9BWV2 254 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 WWTR1Q9GZV5 400 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 MMADHCQ9H3L0 296 aaPredicted RBP16.75■□□□□ 0.27
SDC1-203ENST00000403076 Q9N2J8 555 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 MMP25Q9NPA2 562 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 ZNF223Q9UK11 482 aaPredicted RBP16.75■□□□□ 0.27
SDC1-203ENST00000403076 USP22Q9UPT9 525 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 KCNE3Q9Y6H6 103 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 FAM220BPB1ANY3 271 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 C5orf58C9J3I9 102 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 RRP8O43159 456 aaKnown RBP16.75■□□□□ 0.27
SDC1-203ENST00000403076 ASNA1O43681 348 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 PRKNO60260 465 aaPredicted RBP16.75■□□□□ 0.27
SDC1-203ENST00000403076 TNFRSF21O75509 655 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 NKX2-2O95096 273 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 NR2F1P10589 423 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 WT1P19544 449 aaPredicted RBP16.75■□□□□ 0.27
SDC1-203ENST00000403076 MSX2P35548 267 aaPredicted RBP16.75■□□□□ 0.27
SDC1-203ENST00000403076 MAN2A2P49641 1150 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 AP2B1P63010 937 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 NNATQ16517 81 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 SPATS1Q496A3 300 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 PIGGQ5H8A4 983 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 ERICH5Q6P6B1 374 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 CALHM3Q86XJ0 350 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 HPS6Q86YV9 775 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 KBTBD2Q8IY47 623 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 ULK2Q8IYT8 1036 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 FBXW8Q8N3Y1 598 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 C11orf65Q8NCR3 313 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 TNIP2Q8NFZ5 429 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 ELP5Q8TE02 316 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 THAP4Q8WY91 577 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 PIK3R3Q92569 461 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 MAL2Q969L2 176 aa16.75■□□□□ 0.27
SDC1-203ENST00000403076 LCORQ96JN0 433 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms