RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 TRBV2A0A0J9YWF9 115 aa10.78□□□□□ -0.68
TTC28-201ENST00000397906 RBM34P42696 430 aaKnown RBP10.78□□□□□ -0.68
TTC28-201ENST00000397906 EXOSC7Q15024 291 aaKnown RBP10.78□□□□□ -0.68
TTC28-201ENST00000397906 TRIB3Q96RU7 358 aa10.78□□□□□ -0.68
TTC28-201ENST00000397906 SCRG1O75711 98 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 THBS2P35442 1172 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 OR1D4P47884 311 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 CCL11P51671 97 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 CLCA4Q14CN2 919 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 UBE2UQ5VVX9 321 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 PPP1R3BQ86XI6 285 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 METTL2AQ96IZ6 378 aaKnown RBP10.77□□□□□ -0.68
TTC28-201ENST00000397906 FAAHO00519 579 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 AQP9O43315 295 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 PPM1BO75688 479 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 FADDQ13158 208 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 TRIM61Q5EBN2 209 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 SEC14L1Q92503 715 aa10.77□□□□□ -0.68
TTC28-201ENST00000397906 NARSO43776 548 aaKnown RBP10.77□□□□□ -0.69
TTC28-201ENST00000397906 CD53P19397 219 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 CD68P34810 354 aaPredicted RBP10.77□□□□□ -0.69
TTC28-201ENST00000397906 NEIL2Q969S2 332 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 EXOSC1Q9Y3B2 195 aaKnown RBP10.77□□□□□ -0.69
TTC28-201ENST00000397906 WDPCPO95876 746 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 AMY2BP19961 511 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 HK3P52790 923 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 DPPA4Q7L190 304 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 SHFQ7M4L6 423 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 VTCN1Q7Z7D3 282 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 KLBQ86Z14 1044 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 ZNF584Q8IVC4 421 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 TDHQ8IZJ6 230 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 FUBP1Q96AE4 644 aaKnown RBP10.77□□□□□ -0.69
TTC28-201ENST00000397906 SH3PXD2BA1X283 911 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 SULT2B1O00204 365 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 SLC2A5P22732 501 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 MEX3DQ86XN8 651 aaKnown RBP10.77□□□□□ -0.69
TTC28-201ENST00000397906 TMEM19Q96HH6 336 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 FOXN4Q96NZ1 517 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 CD320Q9NPF0 282 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 EDN3P14138 238 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 CTBSQ01459 385 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 MAP4K2Q12851 820 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 AWAT2Q6E213 333 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 MCATQ8IVS2 390 aaKnown RBP10.77□□□□□ -0.69
TTC28-201ENST00000397906 ZFP41Q8N8Y5 198 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 OR6C4Q8NGE1 309 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 FCAMRQ8WWV6 532 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 CDH10Q9Y6N8 788 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 NRXN3Q9Y4C0 1643 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 EGFP01133 1207 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 HLA-FP30511 346 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 MAP2K4P45985 399 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 GPRC5BQ9NZH0 403 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 TOPAZ1Q8N9V7 1692 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 FAM189BP81408 668 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 SCAPQ12770 1279 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 C1orf220Q5T0J3 134 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 IQCF1Q8N6M8 205 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 SLC41A3Q96GZ6 507 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 INPP5KQ9BT40 448 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 DPH1Q9BZG8 443 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 MCTS1Q9ULC4 181 aaKnown RBP10.77□□□□□ -0.69
TTC28-201ENST00000397906 LCATP04180 440 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 HOXB9P17482 250 aaPredicted RBP10.77□□□□□ -0.69
TTC28-201ENST00000397906 TBC1D15Q8TC07 691 aa10.77□□□□□ -0.69
TTC28-201ENST00000397906 CTXN1P60606 82 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 TDGQ13569 410 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 ENPP6Q6UWR7 440 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 ZNF554Q86TJ5 538 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 NRMQ8IXM6 262 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 LMNTD1Q8N9Z9 388 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 NEIL3Q8TAT5 605 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 ECHDC3Q96DC8 303 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 CNN2Q99439 309 aaKnown RBP10.76□□□□□ -0.69
TTC28-201ENST00000397906 SSX5O60225 188 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 CPOXP36551 454 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 TAMM41Q96BW9 452 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 HS6ST2Q96MM7 605 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 SAGE1Q9NXZ1 904 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 KDM3BQ7LBC6 1761 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 TIMP2P16035 220 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 RPA4Q13156 261 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 SHHQ15465 462 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 VMACQ2NL98 169 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 IL20RBQ6UXL0 311 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 HACD2Q6Y1H2 254 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 MRPL21Q7Z2W9 205 aaKnown RBP10.76□□□□□ -0.69
TTC28-201ENST00000397906 CEACAM19Q7Z692 300 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 ZNF440Q8IYI8 595 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 PEX13Q92968 403 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 SMIM14Q96QK8 99 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 RDH8Q9NYR8 311 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 MBLAC1A4D2B0 266 aaPredicted RBP10.76□□□□□ -0.69
TTC28-201ENST00000397906 RRP8O43159 456 aaKnown RBP10.76□□□□□ -0.69
TTC28-201ENST00000397906 PPP1R3DO95685 299 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 GRK1Q15835 563 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 ZNF789Q5FWF6 425 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 FAM205BPQ63HN1 556 aa10.76□□□□□ -0.69
TTC28-201ENST00000397906 HS3ST5Q8IZT8 346 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms