RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 PRAMEF13Q5VWM6 474 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 KCTD11Q693B1 232 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 TANGO2Q6ICL3 276 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 TMEM108Q6UXF1 575 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 LINGO4Q6UY18 593 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 SLC16A9Q7RTY1 509 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 GPR149Q86SP6 731 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 GPAT4Q86UL3 456 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 C1orf210Q8IVY1 113 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 TCEAL8Q8IYN2 117 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 DEFB124Q8NES8 71 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 CHAC2Q8WUX2 184 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 ZNF419Q96HQ0 510 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-206ENST00000367253 FBXL20Q96IG2 436 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 SLC5A7Q9GZV3 580 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 ZNF768Q9H5H4 540 aaKnown RBP8.24□□□□□ -1.09
SYNE1-206ENST00000367253 PRDM9Q9NQV7 894 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 PARPBPQ9NWS1 579 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 ABCD2Q9UBJ2 740 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 HCFC2Q9Y5Z7 792 aa8.24□□□□□ -1.09
SYNE1-206ENST00000367253 TJP1Q07157 1748 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SEC14L6B5MCN3 397 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 K7ERU9 68 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 AQP7O14520 342 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 ST8SIA5O15466 376 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 AKR7A2O43488 359 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 LINC00032P0C843 101 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 FCGR2AP12318 317 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 RPL10P27635 214 aaKnown RBP8.23□□□□□ -1.09
SYNE1-206ENST00000367253 CPOXP36551 454 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 GTF2BQ00403 316 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 CDKN3Q16667 212 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 ZACNQ401N2 412 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SPIN3Q5JUX0 258 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 MON1BQ7L1V2 547 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 PDZD9Q8IXQ8 264 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 OR4D10Q8NGI6 311 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 OR8K5Q8NH50 307 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 C7orf43Q8WVR3 580 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SLC13A3Q8WWT9 602 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SLC38A4Q969I6 547 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 C7orf26Q96N11 449 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 G6PC3Q9BUM1 346 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SLC6A17Q9H1V8 727 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 LRRN3Q9H3W5 708 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 COQ10BQ9H8M1 238 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 ERVK-5Q9HDB9 667 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SEC14L3Q9UDX4 400 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 GOLT1BQ9Y3E0 138 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-206ENST00000367253 RNF13O43567 381 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 ECI2O75521 394 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 KIR3DL1P43629 444 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 NKPD1Q17RQ9 610 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 PRAMEF20Q5VT98 475 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 ELP2Q6IA86 826 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 GPR155Q7Z3F1 870 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 OR7D4Q8NG98 312 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SPATA22Q8NHS9 363 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 C2CD4CQ8TF44 421 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SPRYD4Q8WW59 207 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-206ENST00000367253 CMTM7Q96FZ5 175 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 CMTM3Q96MX0 182 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 PCED1AQ9H1Q7 454 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 DECR2Q9NUI1 292 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 TMEM248Q9NWD8 314 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 OSER1Q9NX31 292 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 MED31Q9Y3C7 131 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 N4BP2Q86UW6 1770 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-206ENST00000367253 THSD7AQ9UPZ6 1657 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 C10orf71Q711Q0 1435 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 CPSF4LA6NMK7 179 aaKnown RBP8.23□□□□□ -1.09
SYNE1-206ENST00000367253 CLDN5O00501 218 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SHOX2O60902 331 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-206ENST00000367253 PSMD10O75832 226 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 TOX4O94842 621 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 TNFSF15O95150 251 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 LY86O95711 162 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 ESR1P03372 595 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 GDF1P27539 372 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 ASTE1Q2TB18 679 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-206ENST00000367253 ALG10BQ5I7T1 473 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 AVPI1Q5T686 147 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 STEAP3Q658P3 488 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 TMPRSS7Q7RTY8 843 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 SLC39A11Q8N1S5 342 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 C10orf90Q96M02 699 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 OSBPL7Q9BZF2 842 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 DUSP22Q9NRW4 184 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 ZDHHC3Q9NYG2 299 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 RPL36Q9Y3U8 105 aaKnown RBP8.23□□□□□ -1.09
SYNE1-206ENST00000367253 PCDHGA5Q9Y5G8 931 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 RNF212BA8MTL3 300 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 FAM86B1E9PN63 330 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 M6PRP20645 277 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 THBS2P35442 1172 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 EIF2DP41214 584 aaKnown RBP8.23□□□□□ -1.09
SYNE1-206ENST00000367253 VIPR2P41587 438 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 PTGER3P43115 390 aa8.23□□□□□ -1.09
SYNE1-206ENST00000367253 CCR9P51686 369 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms