RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TIMM50Q3ZCQ8 353 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 ACSM5Q6NUN0 579 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 TUBA3EQ6PEY2 450 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 MTSS1LQ765P7 747 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 SLC34A3Q8N130 599 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 MRPL38Q96DV4 380 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 GIMAP5Q96F15 307 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 SIPA1Q96FS4 1042 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 C10orf90Q96M02 699 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 C6orf106Q9H6K1 298 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 HHATLQ9HCP6 504 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 GPR55Q9Y2T6 319 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 F5P12259 2224 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 TAF4O00268 1085 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 SYT5O00445 386 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 ASNA1O43681 348 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 NR2F6P10588 404 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 EFNB1P98172 346 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 CDK5Q00535 292 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 DNASE1L3Q13609 305 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 NFATC4Q14934 902 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 INAVAQ3KP66 663 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 ASPGQ86U10 573 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 VRK2Q86Y07 508 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 FLVCR1-AS1Q8TAF5 88 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 TRNT1Q96Q11 434 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 CD93Q9NPY3 652 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 TRNAU1APQ9NX07 287 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 PCOLCE2Q9UKZ9 415 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 SCML1Q9UN30 329 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 LIPT1Q9Y234 373 aa19.55■□□□□ 0.72
CCDC88B-203ENST00000359902 CSO75390 466 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 GPX5O75715 221 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 SLC25A30Q5SVS4 291 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 PLEKHG7Q6ZR37 379 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 NT5CQ8TCD5 201 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 FGF11Q92914 225 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 BMFQ96LC9 184 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 ARHGDIGQ99819 225 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 S1PR5Q9H228 398 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 POLMQ9NP87 494 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 GIN1Q9NXP7 522 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 CHST2Q9Y4C5 530 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 MYO9BQ13459 2157 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 A0A087WUU8 490 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 ALPPP05187 535 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 RGS1Q08116 209 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 COL9A2Q14055 689 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 SPHARQ15513 63 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 KIF18BQ86Y91 864 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 NANOGP1Q8N7R0 232 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 SLC35A4Q96G79 324 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 WDR92Q96MX6 357 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 ACTRT3Q9BYD9 372 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 QPCTLQ9NXS2 382 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 MKLN1Q9UL63 735 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 NCKAP1Q9Y2A7 1128 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 SCN3AQ9NY46 2000 aa19.54■□□□□ 0.72
CCDC88B-203ENST00000359902 FRS3O43559 492 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 UPK1BO75841 260 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 CYP7B1O75881 506 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 CTHP32929 405 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 CD97P48960 835 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 TAS2R41P59536 307 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 SYT14P1Q58G82 188 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 C6orf132Q5T0Z8 1188 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 RNLSQ5VYX0 342 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 MEX3DQ86XN8 651 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 SLC22A18Q96BI1 424 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 TM4SF19Q96DZ7 209 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 TMEM168Q9H0V1 697 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 CALML5Q9NZT1 146 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 KCMF1Q9P0J7 381 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 CLEC1BQ9P126 229 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 ZIC2O95409 532 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 PORP16435 677 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 GSTM3P21266 225 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 SOX3P41225 446 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 ACTR1BP42025 376 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 ACTR1AP61163 376 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 USP30Q70CQ3 517 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 OR7G2Q8NG99 324 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 OR2A14Q96R47 310 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 MND1Q9BWT6 205 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 PLA2G12AQ9BZM1 189 aa19.53■□□□□ 0.72
CCDC88B-203ENST00000359902 FCMRO60667 390 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 COQ9O75208 318 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 ATAD3BQ5T9A4 648 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 PRICKLE2Q7Z3G6 844 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 C16orf62Q7Z3J2 963 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 PROKR2Q8NFJ6 384 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 LRR1Q96L50 414 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 OR2A5Q96R48 311 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 POLE4Q9NR33 117 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 NTMQ9P121 344 aa19.52■□□□□ 0.72
CCDC88B-203ENST00000359902 A6NCN8 305 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 CTSVO60911 334 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 APBB3O95704 486 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 HBQ1P09105 142 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 ALOX5P09917 674 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms