RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 P2RX7Q99572 595 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RBFOX1Q9NWB1 397 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 B3GALT1Q9Y5Z6 326 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PRODHO43272 600 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 IL7P13232 177 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 NRIP1P48552 1158 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC26A5P58743 744 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CCINQ13939 588 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GAS6Q14393 721 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TMPRSS11FQ6ZWK6 438 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC37A3Q8NCC5 494 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SGTBQ96EQ0 304 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 BTBD2Q9BX70 525 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 UBTD1Q9HAC8 227 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PXMP2Q9NR77 195 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GTDC1Q4AE62 458 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZDHHC20Q5W0Z9 365 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TMPRSS11AQ6ZMR5 421 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 OR10T2Q8NGX3 314 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF431Q8TF32 576 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CRYGNQ8WXF5 182 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MVB12BQ9H7P6 319 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RIMS3Q9UJD0 308 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 IRAK3Q9Y616 596 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 A0A0U1RQK1 487 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 HEXAP06865 529 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 AQP2P41181 271 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PTPN9P43378 593 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ADARB1P78563 741 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 HMGCS1Q01581 520 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SNTB2Q13425 540 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ARHGAP40Q5TG30 622 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 VASNQ6EMK4 673 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CDH26Q8IXH8 852 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SELENOMQ8WWX9 145 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 AP5M1Q9H0R1 490 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 AGAP5A6NIR3 686 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MPTX1A8MV57 137 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 IMPA2O14732 288 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 APOC3P02656 99 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CTBP2P56545 445 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 NKX6-1P78426 367 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GRAPQ13588 217 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PRICKLE2Q7Z3G6 844 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 OR56B2PQ8NGI1 322 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 IFT27Q9BW83 186 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 NUDT9Q9BW91 350 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 C20orf27Q9GZN8 174 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ABI2Q9NYB9 513 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RBAKQ9NYW8 714 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TNS2Q63HR2 1409 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC19A2O60779 497 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CDH1P12830 882 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RPL9P32969 192 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SRP9P49458 86 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DIO1P49895 249 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PSMG4Q5JS54 123 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PRAMEF8Q5VWM4 474 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PRAMEF7Q5VXH5 474 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM65Q6PI78 240 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RNF130Q86XS8 419 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 STAG3L4Q8TBR4 150 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SPATA33Q96N06 139 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ELP3Q9H9T3 547 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 C19orf12Q9NSK7 152 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PCDHB8Q9UN66 801 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TRAV20A0A0B4J274 112 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RNF212BA8MTL3 300 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RDH16O75452 317 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MRPL3P09001 348 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 HAPLN1P10915 354 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PTHLHP12272 177 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 POU3F3P20264 500 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SNRPGP62308 76 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 BCL2L1Q07817 233 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DNM1P34Q6PK57 102 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SPESP1Q6UW49 350 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SV2AQ7L0J3 742 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GPR151Q8TDV0 419 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 HMX1Q9NP08 348 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 STARD5Q9NSY2 213 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PAQR5Q9NXK6 330 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RNF24Q9Y225 148 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF320A2RRD8 509 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 H3BNC9 293 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 M0QZK8 103 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GGCTO75223 188 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SMN1Q16637 294 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLITRK4Q8IW52 837 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 UBE2E3Q969T4 207 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 HRASLS5Q96KN8 279 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 COPS8Q99627 209 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 WDR18Q9BV38 432 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC38A7Q9NVC3 462 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RBMXL2O75526 392 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 APBB3O95704 486 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC6A4P31645 630 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RAB10P61026 200 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MRPS30Q9NP92 439 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CPNE7Q9UBL6 633 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms