RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TRMT10AQ8TBZ6 339 aaKnown RBP8.27□□□□□ -1.09
RTN3-202ENST00000339997 THRSPQ92748 146 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 NXPE2Q96DL1 559 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 CENPOQ9BU64 300 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 DPH1Q9BZG8 443 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 RANBP3Q9H6Z4 567 aaPredicted RBP8.27□□□□□ -1.09
RTN3-202ENST00000339997 CPNE5Q9HCH3 593 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 COPZ2Q9P299 210 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 NAALAD2Q9Y3Q0 740 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 HYKKA2RU49 373 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 CPED1A4D0V7 1026 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 ARPC1BO15143 372 aaKnown RBP8.27□□□□□ -1.09
RTN3-202ENST00000339997 MT-ND4P03905 459 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 GKN3PP0CG01 181 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 ADORA3P0DMS8 318 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 KCNE1P15382 129 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 CLDN12P56749 244 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 RACK1P63244 317 aaKnown RBP8.27□□□□□ -1.09
RTN3-202ENST00000339997 APOFQ13790 326 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 HNF4GQ14541 408 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 TCEAL1Q15170 157 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 TEAD2Q15562 447 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 FOXB2Q5VYV0 432 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 STEAP3Q658P3 488 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 LARP4Q71RC2 724 aaKnown RBP eCLIP8.27□□□□□ -1.09
RTN3-202ENST00000339997 TMEM17Q86X19 198 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 PDZD9Q8IXQ8 264 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 VWA5B2Q8N398 1253 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 OR52P1PQ8NH57 321 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 FOXJ1Q92949 421 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 HYLS1Q96M11 299 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 DPH7Q9BTV6 452 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 MKS1Q9NXB0 559 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 HEBP2Q9Y5Z4 205 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 CACNA1GO43497 2377 aa8.27□□□□□ -1.09
RTN3-202ENST00000339997 ARPC4-TTLL3A0A0A6YYG9 625 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 TMEM150CB9EJG8 249 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 SCDO00767 359 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 GOSR2O14653 212 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 YY2O15391 372 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 KCNJ13O60928 360 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 PTTG1O95997 202 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 AMY2AP04746 511 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 BPIP17213 487 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 M6PRP20645 277 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 GABRB3P28472 473 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 SGCBQ16585 318 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 TMEM44Q2T9K0 475 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 EIF5AL1Q6IS14 154 aaKnown RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 CHRDL2Q6WN34 429 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 C12orf76Q8N812 135 aaPredicted RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 PROKR1Q8TCW9 393 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 FAM46BQ96A09 425 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 FKBP10Q96AY3 582 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 DGAT2Q96PD7 388 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 SYT11Q9BT88 431 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.26□□□□□ -1.093e-6■□□□□ 8.9
RTN3-202ENST00000339997 Q9N2J8 555 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 KCMF1Q9P0J7 381 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 EXOSC1Q9Y3B2 195 aaKnown RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 A0A0G2JLL6 359 aaPredicted RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 DOK2O60496 412 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 AOC2O75106 756 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 BPNT1O95861 308 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 HRGP04196 525 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 C1GALT1C1LP0DN25 315 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 BMP1P13497 986 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 SYN1P17600 705 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 LAG3P18627 525 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 HOXA11P31270 313 aaPredicted RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 CDKN2CP42773 168 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 SLC26A5P58743 744 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 TLE2Q04725 743 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 LMAN2Q12907 356 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 GRM2Q14416 872 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 MAPK14Q16539 360 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 PROX2Q3B8N5 592 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 PRRT2Q7Z6L0 340 aaPredicted RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 B3GNT8Q7Z7M8 397 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 LAX1Q8IWV1 398 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 TMEM121BQ9BXQ6 578 aaPredicted RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 CXCL16Q9H2A7 254 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 TDP1Q9NUW8 608 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 EPHA6Q9UF33 1036 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 RREB1Q92766 1687 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 AQP9O43315 295 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 SMAD6O43541 496 aaKnown RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 SNAI1O95863 264 aaPredicted RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 CSTAP01040 98 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 EPOP01588 193 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 OPN1LWP04000 364 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 APEX1P27695 318 aaKnown RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 RGS6P49758 472 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 PNLIPRP1P54315 467 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 EIF5AP63241 154 aaKnown RBP8.26□□□□□ -1.09
RTN3-202ENST00000339997 DEFB110Q30KQ9 67 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 GPR157Q5UAW9 335 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 AGAP6Q5VW22 663 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 GALNT7Q86SF2 657 aa8.26□□□□□ -1.09
RTN3-202ENST00000339997 ZNF584Q8IVC4 421 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms