RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 ZNF852Q6ZMS4 543 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 REC114Q7Z4M0 266 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 PLA2G15Q8NCC3 412 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 OR10K1Q8NGX5 313 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 LRR1Q96L50 414 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 DUSP26Q9BV47 211 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 ULBP1Q9BZM6 244 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 POLR2J2Q9GZM3 115 aaKnown RBP11.21□□□□□ -0.61
SHMT2-201ENST00000328923 SLC25A51Q9H1U9 297 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 DPAGT1Q9H3H5 408 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 REEP4Q9H6H4 257 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 REEP1Q9H902 201 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 NUBP2Q9Y5Y2 271 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 GBF1Q92538 1859 aa11.21□□□□□ -0.62
SHMT2-201ENST00000328923 LAMA3Q16787 3333 aa11.21□□□□□ -0.62
SHMT2-201ENST00000328923 YJEFN3A6XGL0 299 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 C1orf196B1AJZ1 125 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 SUPT3HB4E1H0 165 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 FABP3P05413 133 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 HCKP08631 526 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ANKRD34CP0C6C1 535 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 NPR2P20594 1047 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 GIFP27352 417 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 S100A11P31949 105 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 GNG10P50151 68 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 CCR6P51684 374 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 CASP9P55211 416 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 DHODHQ02127 395 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ACVR1Q04771 509 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 CACNB2Q08289 660 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-201ENST00000328923 KCNAB1Q14722 419 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ZNF660Q6AZW8 331 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ZNF549Q6P9A3 640 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 PAQR6Q6TCH4 344 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ALKAL1Q6UXT8 129 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 PAQR9Q6ZVX9 377 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 TOP6BLQ8N6T0 577 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ZNF383Q8NA42 475 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 OR56A4Q8NGH8 313 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 TM9SF4Q92544 642 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 NSUN3Q9H649 340 aaKnown RBP11.2□□□□□ -0.62
SHMT2-201ENST00000328923 SYNDIG1Q9H7V2 258 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 SLC6A13Q9NSD5 602 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 RBM22Q9NW64 420 aaKnown RBP eCLIP11.2□□□□□ -0.628e-10■■■■■ 40.7
SHMT2-201ENST00000328923 C1orf109Q9NX04 203 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 FLRT1Q9NZU1 646 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 PCTPQ9UKL6 214 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 CA5BQ9Y2D0 317 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 NYNRINQ9P2P1 1898 aaKnown RBP11.2□□□□□ -0.62
SHMT2-201ENST00000328923 FAM220BPB1ANY3 271 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 HAS3O00219 553 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 PPM1DO15297 605 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 SLC34A2O95436 690 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ESR1P03372 595 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ZNF44P15621 663 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 TAF6P49848 677 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 RBP2P50120 134 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 KIAA0040Q15053 153 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 SV2CQ496J9 727 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 TMEM255AQ5JRV8 349 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 AADACL4Q5VUY2 407 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ZNF613Q6PF04 617 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 TMUB2Q71RG4 321 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 DENND6BQ8NEG7 585 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 KAT2AQ92830 837 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 SLAMF9Q96A28 289 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 SLC25A28Q96A46 364 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 SLC22A18Q96BI1 424 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 TCEAL4Q96EI5 215 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 KCTD7Q96MP8 289 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ZNF382Q96SR6 550 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 THAP7Q9BT49 309 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-201ENST00000328923 TRIM62Q9BVG3 475 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 OPA3Q9H6K4 179 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 VSX1Q9NZR4 365 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-201ENST00000328923 NTMQ9P121 344 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 ZNF225Q9UK10 706 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 WASF3Q9UPY6 502 aa11.2□□□□□ -0.62
SHMT2-201ENST00000328923 BTBD17A6NE02 478 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 TGM5O43548 720 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 FZD7O75084 574 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 MED6O75586 246 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 SPDEFO95238 335 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 F2P00734 622 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 TIMP2P16035 220 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 BPIP17213 487 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 ITGA3P26006 1051 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 CSF2RBP32927 897 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 NPBWR1P48145 328 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 RGS4P49798 205 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 RABGGTBP53611 331 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 RAB8AP61006 207 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 RAB4BP61018 213 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 ELAVL2Q12926 359 aaKnown RBP11.19□□□□□ -0.62
SHMT2-201ENST00000328923 RAB41Q5JT25 222 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 DEF8Q6ZN54 512 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 PGAP1Q75T13 922 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 FGD2Q7Z6J4 655 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 DTD1Q8TEA8 209 aa11.19□□□□□ -0.62
SHMT2-201ENST00000328923 RFT1Q96AA3 541 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms