RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 AWAT2Q6E213 333 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 TRMT10AQ8TBZ6 339 aaKnown RBP13.63□□□□□ -0.23
COL7A1-201ENST00000328333 GTF2H4Q92759 462 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 PCDHA2Q9Y5H9 948 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 M0R2N6 131 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 UGDHO60701 494 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 DRD2P14416 443 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 AK4P27144 223 aaPredicted RBP13.63□□□□□ -0.23
COL7A1-201ENST00000328333 LNX2Q8N448 690 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 OR5P2Q8WZ92 322 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 SPTSSAQ969W0 71 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 MSI2Q96DH6 328 aaKnown RBP13.63□□□□□ -0.23
COL7A1-201ENST00000328333 THAP7Q9BT49 309 aaPredicted RBP13.63□□□□□ -0.23
COL7A1-201ENST00000328333 PCDHGA5Q9Y5G8 931 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 MED12Q93074 2177 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 VARS2Q5ST30 1063 aaKnown RBP13.63□□□□□ -0.23
COL7A1-201ENST00000328333 CDCA2Q69YH5 1023 aaPredicted RBP13.63□□□□□ -0.23
COL7A1-201ENST00000328333 OR6N1Q8NGY5 312 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 CDK15Q96Q40 435 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 IL36AQ9UHA7 158 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 ADH7P40394 386 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 ZNF461Q8TAF7 563 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 DLGAP4Q9Y2H0 992 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 TSPAN11A1L157 253 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 FOXO6A8MYZ6 492 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 SOCS2O14508 198 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 SP2Q02086 613 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 TAP2Q03519 686 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 FUT2Q10981 343 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 TMEM74Q96NL1 305 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 TMEM233B4DJY2 109 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 HLA-AP01891 365 aaKnown RBP13.63□□□□□ -0.23
COL7A1-201ENST00000328333 LPCAT3Q6P1A2 487 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 TO15178 435 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 ZNF585AQ6P3V2 769 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 IQCF1Q8N6M8 205 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 OR5AK2Q8NH90 309 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 EMC7Q9NPA0 242 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 KDM3BQ7LBC6 1761 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 MUSKO15146 869 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 RBMS3Q6XE24 437 aaKnown RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 MCHR1Q99705 422 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 SUV39H2Q9H5I1 410 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 NLE1Q9NVX2 485 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 A0A0A6YYH2 397 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 OR51F1A6NGY5 319 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 A6NJ64 397 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 CD8B2A6NJW9 211 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 NFKBIEO00221 500 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 KCNQ2O43526 872 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 ONECUT3O60422 494 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 C6orf47O95873 294 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 SYPP08247 313 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 CD8BP10966 210 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 CPT2P23786 658 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 MSMO1Q15800 293 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 AGTRAPQ6RW13 159 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 OR6N2Q8NGY6 317 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 FAM53CQ9NYF3 392 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 VEGFDO43915 354 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 LRRC32Q14392 662 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 ECM1Q16610 540 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 CARD16Q5EG05 197 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 B3GLCTQ6Y288 498 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 OR9A1PQ8NGU1 263 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 SALL4Q9UJQ4 1053 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 PTBP1P26599 531 aaKnown RBP eCLIP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 RANP62826 216 aaKnown RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 DUSP7Q16829 419 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 MITD1Q8WV92 249 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 C10orf90Q96M02 699 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 SLCO5A1Q9H2Y9 848 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 METTL7AQ9H8H3 244 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 PCDHGC4Q9Y5F7 938 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 KHNYNO15037 678 aaKnown RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 RAB3AP20336 220 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 ARHGAP19Q14CB8 494 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 TAC4Q86UU9 113 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 TMEM151AQ8N4L1 468 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 BCL9O00512 1426 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 A6NHS1 94 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 ARGFXA6NJG6 315 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 FGF3P11487 239 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 NFYBP25208 207 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 HOXA10P31260 410 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 NDUFV1P49821 464 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 GLO1Q04760 184 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 TBCEQ15813 527 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 C2orf76Q3KRA6 126 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 TMEM164Q5U3C3 297 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 MANEALQ5VSG8 457 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 PSRC1Q6PGN9 363 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 SHFQ7M4L6 423 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 PIGMQ9H3S5 423 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 INTS1Q8N201 2190 aaKnown RBP13.62□□□□□ -0.23
COL7A1-201ENST00000328333 LPLP06858 475 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 OR2T11Q8NH01 316 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 MUL1Q969V5 352 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 ZNF442Q9H7R0 627 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms