RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 KCNK12Q9HB15 430 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 ISYNA1Q9NPH2 558 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 PLAGL1Q9UM63 463 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 ELFN1P0C7U0 828 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 CCT3P49368 545 aaKnown RBP12.67□□□□□ -0.38
SKA3-202ENST00000314759 NDUFA9Q16795 377 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 DUSP6Q16828 381 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 ENTPD8Q5MY95 495 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 TRMT11Q7Z4G4 463 aaKnown RBP12.67□□□□□ -0.38
SKA3-202ENST00000314759 SLC51BQ86UW2 128 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 TRAPPC5Q8IUR0 188 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 CYB5D2Q8WUJ1 264 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 NRTNQ99748 197 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 DIABLOQ9NR28 239 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 TRDV1A0A1B0GX56 115 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 ISM1B1AKI9 464 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 XPAP23025 273 aaPredicted RBP12.66□□□□□ -0.38
SKA3-202ENST00000314759 BSGP35613 385 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 AVPR1BP47901 424 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 SLC6A11P48066 632 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 CTBP2P56545 445 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 MRPL28Q13084 256 aaKnown RBP12.66□□□□□ -0.38
SKA3-202ENST00000314759 CCDC85BQ15834 202 aaPredicted RBP12.66□□□□□ -0.38
SKA3-202ENST00000314759 PRAMEF14Q5SWL7 426 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 PRAMEF13Q5VWM6 474 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 KHDRBS2Q5VWX1 349 aaKnown RBP12.66□□□□□ -0.38
SKA3-202ENST00000314759 DPPA4Q7L190 304 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 OR8H3Q8N146 312 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 ARIH2OSQ8N7S6 290 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 WACQ9BTA9 647 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 TMED9Q9BVK6 235 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 SAP130Q9H0E3 1048 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 OR2AG1Q9H205 316 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 AHSPQ9NZD4 102 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 OR5K3A6NET4 321 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 SLC22A5O76082 557 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 FRKP42685 505 aaPredicted RBP12.66□□□□□ -0.38
SKA3-202ENST00000314759 PER3P56645 1201 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 ANKRD54Q6NXT1 300 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 METAP1DQ6UB28 335 aaPredicted RBP12.66□□□□□ -0.38
SKA3-202ENST00000314759 SLC36A4Q6YBV0 504 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 SZRD1Q7Z422 152 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 ANKRD53Q8N9V6 530 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 OTUB1Q96FW1 271 aaPredicted RBP12.66□□□□□ -0.38
SKA3-202ENST00000314759 OR51I1Q9H343 314 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 P2RX2Q9UBL9 471 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 EXOSC1Q9Y3B2 195 aaKnown RBP12.66□□□□□ -0.38
SKA3-202ENST00000314759 MTCL1Q9Y4B5 1905 aaKnown RBP12.66□□□□□ -0.38
SKA3-202ENST00000314759 SCN5AQ14524 2016 aa12.66□□□□□ -0.38
SKA3-202ENST00000314759 TSPAN11A1L157 253 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 A8MUA0 341 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 INMT-MINDY4F8WBC2 141 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 K7ESM1 405 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 PI15O43692 258 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 AKAP8O43823 692 aaKnown RBP12.65□□□□□ -0.38
SKA3-202ENST00000314759 NR2F1P10589 423 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 MMP12P39900 470 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 MINDY4Q4G0A6 757 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 LHX8Q68G74 356 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 SLC27A4Q6P1M0 643 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 DNAJC5GQ8N7S2 189 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 DTX3Q8N9I9 347 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 VN1R2Q8NFZ6 395 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 OR8D4Q8NGM9 314 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 NACC2Q96BF6 587 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 C1QTNF7Q9BXJ2 289 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 EPHX3Q9H6B9 360 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 TBC1D17Q9HA65 648 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 I3L521 148 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 TBX19O60806 448 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 SLC43A1O75387 559 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 OR7A10O76100 309 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 SREBF2Q12772 1141 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 MAP4K2Q12851 820 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 POU4F3Q15319 338 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 FCN2Q15485 313 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 TRILQ7L0X0 811 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 KRT78Q8N1N4 520 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 BMPERQ8N8U9 685 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 SETD7Q8WTS6 366 aaKnown RBP12.65□□□□□ -0.38
SKA3-202ENST00000314759 DNAJA4Q8WW22 397 aaPredicted RBP12.65□□□□□ -0.38
SKA3-202ENST00000314759 PPP1R16AQ96I34 528 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 HYLS1Q96M11 299 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 C17orf62Q9BQA9 187 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 PRR14Q9BWN1 585 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 B3GNT4Q9C0J1 378 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 LHX9Q9NQ69 397 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 PAK6Q9NQU5 681 aaPredicted RBP12.65□□□□□ -0.38
SKA3-202ENST00000314759 TEX10Q9NXF1 929 aaPredicted RBP12.65□□□□□ -0.38
SKA3-202ENST00000314759 CLCA2Q9UQC9 943 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 POLHQ9Y253 713 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 CDH10Q9Y6N8 788 aa12.65□□□□□ -0.38
SKA3-202ENST00000314759 IRGMA1A4Y4 181 aa12.65□□□□□ -0.39
SKA3-202ENST00000314759 BTN3A3O00478 584 aa12.65□□□□□ -0.39
SKA3-202ENST00000314759 ORC5O43913 435 aa12.65□□□□□ -0.39
SKA3-202ENST00000314759 TMPRSS11DO60235 418 aa12.65□□□□□ -0.39
SKA3-202ENST00000314759 ACADLP28330 430 aa12.65□□□□□ -0.39
SKA3-202ENST00000314759 SLC1A3P43003 542 aa12.65□□□□□ -0.39
SKA3-202ENST00000314759 SOX9P48436 509 aa12.65□□□□□ -0.39
SKA3-202ENST00000314759 SF3A2Q15428 464 aaKnown RBP12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 200.1 ms