RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 OR2T4Q8NH00 348 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 OR52P1PQ8NH57 321 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 FNDC9Q8TBE3 224 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 MSLNLQ96KJ4 702 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 PPP4R1LQ9P1A2 415 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 EPOP01588 193 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 ADORA3P0DMS8 318 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 ADH5P11766 374 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 GSTM4Q03013 218 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 LRP8Q14114 963 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 PHF19Q5T6S3 580 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 HS3ST4Q9Y661 456 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 TP53I11O14683 189 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 LDB2O43679 373 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 IDO2Q6ZQW0 420 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 ZFP41Q8N8Y5 198 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 OR1S1Q8NH92 325 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 SFXN5Q8TD22 340 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 ADAP00813 363 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 KNG1P01042 644 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 GGT1P19440 569 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 OR52E2Q8NGJ4 325 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 IL21RQ9HBE5 538 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 SCML2Q9UQR0 700 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 ATP6V1G2-DDX39BF2Z307 99 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 HRH2P25021 359 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 SERPINF1P36955 418 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 KEAP1Q14145 624 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 IGFN1Q86VF2 1251 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 FAM46AQ96IP4 442 aaKnown RBP13.23□□□□□ -0.29
CSPG4-201ENST00000308508 SLC28A3Q9HAS3 691 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 SRA1Q9HD15 236 aaKnown RBP13.23□□□□□ -0.29
CSPG4-201ENST00000308508 SERTAD4Q9NUC0 356 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 FBXO7Q9Y3I1 522 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 SDHDO14521 159 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 PPP1R11O60927 126 aaPredicted RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 GPR4P46093 362 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 RABGGTBP53611 331 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF648Q5T619 568 aaPredicted RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 SUSD1Q6UWL2 747 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 GKN2Q86XP6 184 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF679Q8IYX0 411 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 FCRL3Q96P31 734 aaPredicted RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 THAP7Q9BT49 309 aaPredicted RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 GCM1Q9NP62 436 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 PREX1Q8TCU6 1659 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 TRAV18A0A075B6X5 111 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 HSD17B1P14061 328 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 GRPRP30550 384 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 PRKAR1BP31321 381 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 RPL23AP62750 156 aaKnown RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 MPP7Q5T2T1 576 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 ARNTL2Q8WYA1 636 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 ELP4Q96EB1 424 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 ANKMY1Q9P2S6 941 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 NDRG2Q9UN36 371 aaKnown RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 SPATA31D1Q6ZQQ2 1576 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 MEIOCA2RUB1 952 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF487B1APH4 448 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 KRBOX1C9JBD0 128 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 RAB3DO95716 219 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 TREML2Q5T2D2 321 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 HES5Q5TA89 166 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 ENPP6Q6UWR7 440 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 PLD6Q8N2A8 252 aaKnown RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 GTF2H4Q92759 462 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 TXNL4BQ9NX01 149 aaKnown RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 SOCS5O75159 536 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 BEST1O76090 585 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 C6P13671 934 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 TMEM41BQ5BJD5 291 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 LRRC25Q8N386 305 aaPredicted RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 CLDN19Q8N6F1 224 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF416Q9BWM5 594 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 SLC25A31Q9H0C2 315 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 FBRSL1Q9HCM7 1045 aaKnown RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 PLAGL1Q9UM63 463 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 EFCAB7A8K855 629 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 HEXBP07686 556 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 CRYZQ08257 329 aaKnown RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 TECRLQ5HYJ1 363 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 OR4D6Q8NGJ1 314 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 OR51T1Q8NGJ9 327 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 LILRB4Q8NHJ6 448 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 SH3RF2Q8TEC5 729 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 FEVQ99581 238 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 SNRNP70P08621 437 aaKnown RBP13.22□□□□□ -0.29
CSPG4-201ENST00000308508 BTN1A1Q13410 526 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 BTF3L4Q96K17 158 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 OR8D2Q9GZM6 311 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 HSD3B7Q9H2F3 369 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 LOC285095A0A1B0GVY8 99 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 TSPAN11A1L157 253 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 SHMT2P34897 504 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 C16orf78Q8WTQ4 265 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 CYB5D2Q8WUJ1 264 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 HINT2Q9BX68 163 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 OR6C2Q9NZP2 312 aa13.22□□□□□ -0.29
CSPG4-201ENST00000308508 C20orf202A1L168 122 aa13.21□□□□□ -0.29
CSPG4-201ENST00000308508 ADAM10O14672 748 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms