RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 C12orf71A8MTZ7 269 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 LEUTXA8MZ59 168 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 C1QTNF3-AMACRE9PGA6 284 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 FAAHO00519 579 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TFECO14948 347 aaPredicted RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 ORC5O43913 435 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 CPNE3O75131 537 aaKnown RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SEMA4FO95754 770 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 RECKO95980 971 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 GASTP01350 101 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TSPAN19P0C672 248 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 OR56A5P0C7T3 313 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 POLR2CP19387 275 aaPredicted RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TIA1P31483 386 aaKnown RBP eCLIP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 CCR7P32248 378 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 RECQLP46063 649 aaPredicted RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 CDK6Q00534 326 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 CD83Q01151 205 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 ZNF91Q05481 1191 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TP53BP2Q13625 1128 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 DSG2Q14126 1118 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 PTPRRQ15256 657 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TATDN3Q17R31 274 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 ARSIQ5FYB1 569 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 FAM46CQ5VWP2 391 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 QSOX2Q6ZRP7 698 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SLC51BQ86UW2 128 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TMIEQ8NEW7 156 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 NLGN4YQ8NFZ3 816 aaPredicted RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 CADM4Q8NFZ8 388 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 OR2AP1Q8NGE2 309 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 OR6K2Q8NGY2 324 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 VANGL1Q8TAA9 524 aaPredicted RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 PIGKQ92643 395 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 ARRDC3Q96B67 414 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 ARPC5LQ9BPX5 153 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 FUZQ9BT04 418 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 POLDIP3Q9BY77 421 aaKnown RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 C6orf106Q9H6K1 298 aaPredicted RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SGK2Q9HBY8 427 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SEMA4GQ9NTN9 838 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TMEM74BQ9NUR3 256 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 PILRBQ9UKJ0 227 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SLC6A14Q9UN76 642 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 FNDC3AQ9Y2H6 1198 aaKnown RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TMA7Q9Y2S6 64 aaKnown RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SF3B6Q9Y3B4 125 aaKnown RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 RALGAPA1Q6GYQ0 2036 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 METTL12A8MUP2 240 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 MYL12BO14950 172 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 LEFTY1O75610 366 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 RAB36O95755 333 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 PRNPP04156 253 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 IFNW1P05000 195 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 ALPIP09923 528 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 UBL4AP11441 157 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 MYL12AP19105 171 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 GALP22466 123 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 GKP32189 559 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SOX3P41225 446 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SMIM11AP58511 58 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 IRF8Q02556 426 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 CNTN1Q12860 1018 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 HNRNPA0Q13151 305 aaKnown RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 CSRP2Q16527 193 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 NDUFA9Q16795 377 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 PEAR1Q5VY43 1037 aaPredicted RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TCEAL6Q6IPX3 200 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 LYPD8Q6UX82 237 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TRILQ7L0X0 811 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 IQCF2Q8IXL9 164 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 LRRC56Q8IYG6 542 aaPredicted RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SLC34A3Q8N130 599 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 LINC00471Q8N535 108 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 FGF11Q92914 225 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 FOXJ1Q92949 421 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TCEAL3Q969E4 200 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 MAL2Q969L2 176 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 CREB3L1Q96BA8 519 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SLC6A18Q96N87 628 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TEFMQ96QE5 360 aaKnown RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TMEM43Q9BTV4 400 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TSSK6Q9BXA6 273 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 PCED1AQ9H1Q7 454 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 REEP4Q9H6H4 257 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 ZDHHC6Q9H6R6 413 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TRIM39Q9HCM9 518 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 ELF5Q9UKW6 265 aaPredicted RBP9.74□□□□□ -0.85
UPF3B-201ENST00000276201 TMCC3Q9ULS5 477 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 SNX11Q9Y5W9 270 aa9.74□□□□□ -0.85
UPF3B-201ENST00000276201 PRAMEF33A0A0G2JMD5 474 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 A0A1W2PQ72 361 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 ZSCAN5BA6NJL1 495 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 C10orf142B7Z368 130 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 KPNA3O00505 521 aaPredicted RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 PRAMEF10O60809 474 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 ZNF806P0C7X5 589 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 CD22P20273 847 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 AZGP1P25311 298 aaKnown RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 MAPK9P45984 424 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms