RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 NR1D2Q14995 579 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 LTB4RQ15722 352 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 EXOC3L2Q2M3D2 409 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 DEFB133Q30KQ1 61 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 MAMSTRQ6ZN01 415 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 FAR1Q8WVX9 515 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 RORBQ92753 470 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 TRNT1Q96Q11 434 aaKnown RBP14.35□□□□□ -0.11
SF3B4-201ENST00000271628 GABARAPL3Q9BY60 117 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 NECTIN3Q9NQS3 549 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 ENOPH1Q9UHY7 261 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 TMEM131Q92545 1883 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 KNL1Q8NG31 2342 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 SULT1C4O75897 302 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 PIAS2O75928 621 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 GABARAPO95166 117 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 CHRM4P08173 479 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 ACVR2AP27037 513 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 PPM1FP49593 454 aaPredicted RBP14.35□□□□□ -0.11
SF3B4-201ENST00000271628 CLK3P49761 638 aaKnown RBP14.35□□□□□ -0.11
SF3B4-201ENST00000271628 SMIM11AP58511 58 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 SLC35A2P78381 396 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 AQP6Q13520 282 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 SPCS2Q15005 226 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 RGS21Q2M5E4 152 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 CDC73Q6P1J9 531 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 OR4N5Q8IXE1 308 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 TAGAPQ8N103 731 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 PARP8Q8N3A8 854 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 OR7G2Q8NG99 324 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 CNIH3Q8TBE1 160 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 SNRNP27Q8WVK2 155 aaKnown RBP14.35□□□□□ -0.11
SF3B4-201ENST00000271628 VMP1Q96GC9 406 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 CHRNA10Q9GZZ6 450 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 ERVMER34-1Q9H9K5 563 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 HMG20AQ9NP66 347 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 CCNB1IP1Q9NPC3 277 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 STARD5Q9NSY2 213 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 GIN1Q9NXP7 522 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 EPHA6Q9UF33 1036 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 SLC9A8Q9Y2E8 581 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 A0A087WV62 115 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 RHPN2P1A8MT19 583 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 CLDN25C9JDP6 229 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 HCRTR1O43613 425 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 CCNB2O95067 398 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 SHC2P98077 582 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 ZNF846Q147U1 533 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 PRTGQ2VWP7 1150 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 DEFB110Q30KQ9 67 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 TCTN3Q6NUS6 607 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 FAM92BQ6ZTR7 304 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 C16orf62Q7Z3J2 963 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 CENPSQ8N2Z9 138 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 SLC5A8Q8N695 610 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 ZDHHC12Q96GR4 267 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 ALPK1Q96QP1 1244 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 PINK1Q9BXM7 581 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 TRIM45Q9H8W5 580 aaPredicted RBP14.34□□□□□ -0.11
SF3B4-201ENST00000271628 EQTNQ9NQ60 294 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 TMCC3Q9ULS5 477 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 CORINQ9Y5Q5 1042 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 ABCA7Q8IZY2 2146 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 CCDC163A0A0D9SF12 145 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 TLCD2A6NGC4 264 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 SGK494L7N484 410 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 XPNPEP2O43895 674 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 RPP38P78345 283 aaKnown RBP14.34□□□□□ -0.11
SF3B4-201ENST00000271628 MLLT1Q03111 559 aaPredicted RBP14.34□□□□□ -0.11
SF3B4-201ENST00000271628 MVKQ03426 396 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 FUT5Q11128 374 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 FAM53BQ14153 422 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 GANABQ14697 944 aaKnown RBP14.34□□□□□ -0.11
SF3B4-201ENST00000271628 NPTX1Q15818 432 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 ZNF628Q5EBL2 1059 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 C6orf132Q5T0Z8 1188 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 GARNL3Q5VVW2 1013 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 MFSD12Q6NUT3 480 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 ZCCHC12Q6PEW1 402 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 B3GNT8Q7Z7M8 397 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 ARHGEF39Q8N4T4 335 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 SVOPQ8N4V2 548 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 OR5T3Q8NGG3 340 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 OTUB1Q96FW1 271 aaPredicted RBP14.34□□□□□ -0.11
SF3B4-201ENST00000271628 SH3YL1Q96HL8 342 aaPredicted RBP14.34□□□□□ -0.11
SF3B4-201ENST00000271628 HRASLS5Q96KN8 279 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 CD180Q99467 661 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 WDR12Q9GZL7 423 aaKnown RBP14.34□□□□□ -0.11
SF3B4-201ENST00000271628 PDE7BQ9NP56 450 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 TMEM74BQ9NUR3 256 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 ACAD8Q9UKU7 415 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 C19orf53Q9UNZ5 99 aaPredicted RBP14.34□□□□□ -0.11
SF3B4-201ENST00000271628 PLCL2Q9UPR0 1127 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 CSNK1G3Q9Y6M4 447 aa14.34□□□□□ -0.11
SF3B4-201ENST00000271628 EML5Q05BV3 1969 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 BLACEA4D250 179 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 J3QRK9 145 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 PCDH17O14917 1159 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 FGF17O60258 216 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 PLOD3O60568 738 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms