RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ESPNLQ6ZVH7 1005 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 BPHLQ86WA6 291 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 PRR22Q8IZ63 422 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 NHLRC2Q8NBF2 726 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 KLK6Q92876 244 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 SAT2Q96F10 170 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 RNF19AQ9NV58 838 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 CCDC85CA6NKD9 419 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 KIAA0513O60268 411 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 GSK3BP49841 420 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 GRB7Q14451 532 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 SPHARQ15513 63 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 PNCKQ6P2M8 343 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 MRPL21Q7Z2W9 205 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 OR4E2Q8NGC2 313 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 AK6Q9Y3D8 172 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 SPATA31C2B4DYI2 1134 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 LRCH4O75427 683 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 C6orf47O95873 294 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 SERPINA5P05154 406 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 NFYBP25208 207 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 IL13RA1P78552 427 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 PIGWQ7Z7B1 504 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 IQCKQ8N0W5 287 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 Q8N9G6 341 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF461Q8TAF7 563 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 CMTM2Q8TAZ6 248 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 TSGA13Q96PP4 275 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 OCSTAMPQ9BR26 566 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 HTR3BO95264 441 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 RASAL1O95294 804 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 ACVR1BP36896 505 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 CCBE1Q6UXH8 406 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 SYT14Q8NB59 555 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 OR2T27Q8NH04 317 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 C10orf82Q8WW14 230 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 BCL7BQ9BQE9 202 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 FAM212BQ9NTI7 297 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 POLLQ9UGP5 575 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 SPATA31E1Q6ZUB1 1445 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 MED6O75586 246 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 RCAN2Q14206 197 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 FGFBP1Q14512 234 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM198Q66K66 360 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 ZDHHC14Q8IZN3 488 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 GCNT2Q8N0V5 402 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 TRMT2BQ96GJ1 504 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 DEFB126Q9BYW3 111 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 LOC102725191A0A1B0GVB3 256 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 ANKRD30BLA7E2S9 258 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 CHRNA1P02708 482 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 MMP3P08254 477 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 RPS13P62277 151 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 REM2Q8IYK8 340 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 CERS5Q8N5B7 392 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 TRUB1Q8WWH5 349 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 BIRC7Q96CA5 298 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 HMGCS1Q01581 520 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 ATG9BQ674R7 924 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 FAM180BQ6P0A1 224 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 IRF2BP2Q7Z5L9 587 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 HOXD1Q9GZZ0 328 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 MYO3AQ8NEV4 1616 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 SLC38A8A6NNN8 435 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 NFYAP23511 347 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 HOXD11P31277 338 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 MC3RP41968 323 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 PLCXD2Q0VAA5 305 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 PPP2R2DQ66LE6 453 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 NPAS4Q8IUM7 802 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 LMX1AQ8TE12 382 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNRF4Q8WWF5 429 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 NT5C3BQ969T7 300 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 SNX27Q96L92 541 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 LIN7CQ9NUP9 197 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 A0A1W2PPK0 400 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 DVL1O14640 695 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 TNFSF12O43508 249 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 PTHP01270 115 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 DVL1P1P54792 670 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 PKDCCQ504Y2 493 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 CORO2AQ92828 525 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 RPL10LQ96L21 214 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM248Q9NWD8 314 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 C14orf119Q9NWQ9 140 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 AOC1P19801 751 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 PRPS1P60891 318 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM151AQ8N4L1 468 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 AMDHD1Q96NU7 426 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 PKP2Q99959 881 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 CMSS1Q9BQ75 279 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 PITHD1Q9GZP4 211 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 CCM2LQ9NUG4 571 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 B4GAT1O43505 415 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 NAA10P41227 235 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 GSK3AP49840 483 aa13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 HNRNPFP52597 415 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-201ENST00000263630 SNTB1Q13884 538 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms