RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 C12orf76Q8N812 135 aaPredicted RBP10.22□□□□□ -0.77
CD44-201ENST00000263398 POGLUT1Q8NBL1 392 aa10.22□□□□□ -0.77
CD44-201ENST00000263398 ANKK1Q8NFD2 765 aa10.22□□□□□ -0.77
CD44-201ENST00000263398 OR4C15Q8NGM1 316 aa10.22□□□□□ -0.77
CD44-201ENST00000263398 SGCDQ92629 289 aa10.22□□□□□ -0.77
CD44-201ENST00000263398 GTF2H4Q92759 462 aa10.22□□□□□ -0.77
CD44-201ENST00000263398 ISG20Q96AZ6 181 aaKnown RBP10.22□□□□□ -0.77
CD44-201ENST00000263398 FAM46AQ96IP4 442 aaKnown RBP10.22□□□□□ -0.77
CD44-201ENST00000263398 PDE7BQ9NP56 450 aa10.22□□□□□ -0.77
CD44-201ENST00000263398 EPHA6Q9UF33 1036 aa10.22□□□□□ -0.77
CD44-201ENST00000263398 USP54Q70EL1 1684 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 ANTXRLA6NF34 631 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 TFAP2AP05549 437 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 UCHL1P09936 223 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 H2BFMP0C1H6 154 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 CTSAP10619 480 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 LHCGRP22888 699 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 RBMXP38159 391 aaKnown RBP10.21□□□□□ -0.77
CD44-201ENST00000263398 MAGEA3P43357 314 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 ALG10BQ5I7T1 473 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 PDSS1Q5T2R2 415 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 PHF19Q5T6S3 580 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 KCTD11Q693B1 232 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 PAQR9Q6ZVX9 377 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 GPR149Q86SP6 731 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 OR4N5Q8IXE1 308 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 SYNPOQ8N3V7 929 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 CHDHQ8NE62 594 aaPredicted RBP10.21□□□□□ -0.77
CD44-201ENST00000263398 SAMD11Q96NU1 681 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 ZNF559Q9BR84 538 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 SFXN1Q9H9B4 322 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 RXFP3Q9NSD7 469 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 GPR52Q9Y2T5 361 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 CEPT1Q9Y6K0 416 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 TEX13CA0A0J9YWL9 993 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 A0A0U1RQS6 177 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 A0A1B0GVC2 190 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 TCRBV5S1A1TA0A578 114 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 CCDC85CA6NKD9 419 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 ZBTB42B2RXF5 422 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 B4GAT1O43505 415 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 CDC40O60508 579 aaKnown RBP eCLIP10.21□□□□□ -0.77
CD44-201ENST00000263398 CREBL2O60519 120 aaPredicted RBP10.21□□□□□ -0.77
CD44-201ENST00000263398 ALDOCP09972 364 aaKnown RBP10.21□□□□□ -0.77
CD44-201ENST00000263398 ZNF806P0C7X5 589 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 CDK4P11802 303 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 CA5AP35218 305 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 CDKN2CP42773 168 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 PIWIL3Q7Z3Z3 882 aaKnown RBP10.21□□□□□ -0.77
CD44-201ENST00000263398 RBM12BQ8IXT5 1001 aaKnown RBP10.21□□□□□ -0.77
CD44-201ENST00000263398 ZNF283Q8N7M2 679 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 ZNF565Q8N9K5 539 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 OR2T4Q8NH00 348 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 SNIP1Q8TAD8 396 aaKnown RBP10.21□□□□□ -0.77
CD44-201ENST00000263398 MAELQ96JY0 434 aaKnown RBP10.21□□□□□ -0.77
CD44-201ENST00000263398 HYLS1Q96M11 299 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 GSKIPQ9P0R6 139 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 C5AR2Q9P296 337 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 ANKMY1Q9P2S6 941 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 UBQLN2Q9UHD9 624 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 CLEC4EQ9ULY5 219 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 DHDHQ9UQ10 334 aa10.21□□□□□ -0.77
CD44-201ENST00000263398 FAM221BA6H8Z2 402 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 SMAD9O15198 467 aaKnown RBP10.21□□□□□ -0.78
CD44-201ENST00000263398 SCGB1D2O95969 90 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 ADRA1AP35348 466 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 RELAQ04206 551 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 RUNX3Q13761 415 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 RNF111Q6ZNA4 994 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 IGFN1Q86VF2 1251 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 IQCF1Q8N6M8 205 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 OR52E2Q8NGJ4 325 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 JPH3Q8WXH2 748 aaPredicted RBP10.21□□□□□ -0.78
CD44-201ENST00000263398 NEIL2Q969S2 332 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 ATG5Q9H1Y0 275 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 DMRT3Q9NQL9 472 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 TRIM64CA6NLI5 447 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 TOXO94900 526 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 PGCP20142 388 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 DDCP20711 480 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 CRHBPP24387 322 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 SPIN3Q5JUX0 258 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 FIGLAQ6QHK4 219 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 UBQLNLQ8IYU4 475 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 SLC41A3Q96GZ6 507 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 KLF16Q9BXK1 252 aaPredicted RBP10.21□□□□□ -0.78
CD44-201ENST00000263398 SLC17A9Q9BYT1 436 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 CLMPQ9H6B4 373 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 MYNNQ9NPC7 610 aa10.21□□□□□ -0.78
CD44-201ENST00000263398 M0R3H8 397 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 VNN2O95498 520 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 IL1RNP18510 177 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 GABRB3P28472 473 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 VIPR2P41587 438 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 HERV-K104P61576 105 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 PLCXD2Q0VAA5 305 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 PLEKHN1Q494U1 663 aaPredicted RBP10.2□□□□□ -0.78
CD44-201ENST00000263398 LRIF1Q5T3J3 769 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 SLC22A10Q63ZE4 541 aa10.2□□□□□ -0.78
CD44-201ENST00000263398 TMEM53Q6P2H8 277 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms