RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CTSVO60911 334 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 CASRP41180 1078 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 FAM53BQ14153 422 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 BMP8AQ7Z5Y6 402 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 CNTRLQ7Z7A1 2325 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF440Q8IYI8 595 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF619Q8N2I2 560 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 RFKQ969G6 155 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 EPYCQ99645 322 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 IFT27Q9BW83 186 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 LRRN3Q9H3W5 708 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 EXO5Q9H790 373 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 PRDM7Q9NQW5 492 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 UCKL1Q9NWZ5 548 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 CHD5Q8TDI0 1954 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 PLXNA4Q9HCM2 1894 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 C2orf92A0A1B0GVN3 265 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 M0R3H8 397 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 SOCS2O14508 198 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 TP53I11O14683 189 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 HLA-DQA2P01906 255 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 IFI30P13284 250 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 S100A5P33763 92 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 DCDP81605 110 aaKnown RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 DCST2Q5T1A1 773 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 OR4K17Q8NGC6 315 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 MVB12AQ96EY5 273 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 FBXL20Q96IG2 436 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF354BQ96LW1 612 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 BTBD2Q9BX70 525 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 SPRTNQ9H040 489 aaPredicted RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 CCL27Q9Y4X3 112 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 NUP214P35658 2090 aaPredicted RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 ANAPC1Q9H1A4 1944 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 A0A0A6YYD5 115 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 SIGLEC6O43699 453 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 OXSR1O95747 527 aaPredicted RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 MPLP40238 635 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 NR0B1P51843 470 aaKnown RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 SMSP52788 366 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 UBE2IP63279 158 aaKnown RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 TMEM44Q2T9K0 475 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 TMEM71Q6P5X7 295 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 ZCCHC12Q6PEW1 402 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 CAMKMTQ7Z624 323 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 RIMKLAQ8IXN7 391 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 SLC22A8Q8TCC7 542 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 TRNT1Q96Q11 434 aaKnown RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 OR2A5Q96R48 311 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 FEVQ99581 238 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 ZBTB20Q9HC78 741 aaPredicted RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 SERINC1Q9NRX5 453 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 PISDQ9UG56 409 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 LTBP2Q14767 1821 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 IGHV1OR21-1A0A087WYE8 117 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 A0A1W2PPV9 198 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 NPIPB8E9PQR5 432 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 H3BNX3 289 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 CD63P08962 238 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 MYF5P13349 255 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 RAE1P78406 368 aaKnown RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 EPHX4Q8IUS5 362 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 SLC34A3Q8N130 599 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 SLC22A18ASQ8N1D0 253 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 KLHL6Q8WZ60 621 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 CDV3Q9UKY7 258 aaKnown RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 GTF2A1LQ9UNN4 478 aa10.87□□□□□ -0.67
VPS4A-201ENST00000254950 PTRH2Q9Y3E5 179 aaKnown RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 MAP1BP46821 2468 aaKnown RBP10.87□□□□□ -0.67
VPS4A-201ENST00000254950 A8MVJ9 347 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 ARHGAP33O14559 1287 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 XKRYO14609 159 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 SCO2O43819 266 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 SOX14O95416 240 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 TCEA1P23193 301 aaKnown RBP10.86□□□□□ -0.67
VPS4A-201ENST00000254950 RBMS1P29558 406 aaKnown RBP10.86□□□□□ -0.67
VPS4A-201ENST00000254950 CLEC12AQ5QGZ9 265 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 HSDL2Q6YN16 418 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 SLC29A1Q99808 456 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 PIGUQ9H490 435 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 CLIC3O95833 236 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 IGLV3-19P01714 112 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 HOXD12P35452 270 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 RUNX2Q13950 521 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 IQCCQ4KMZ1 466 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 RBM48Q5RL73 367 aaKnown RBP10.86□□□□□ -0.67
VPS4A-201ENST00000254950 CCNJQ5T5M9 372 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 MFSD12Q6NUT3 480 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 SMARCD3Q6STE5 483 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 VN1R4Q7Z5H5 301 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 WDR5BQ86VZ2 330 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 GNPDA2Q8TDQ7 276 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 CREB3L4Q8TEY5 395 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 NRG4Q8WWG1 115 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF578Q96N58 590 aaPredicted RBP10.86□□□□□ -0.67
VPS4A-201ENST00000254950 IL4I1Q96RQ9 567 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 TMEM121BQ9BXQ6 578 aaPredicted RBP10.86□□□□□ -0.67
VPS4A-201ENST00000254950 IKZF5Q9H5V7 419 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 A4GALTQ9NPC4 353 aa10.86□□□□□ -0.67
VPS4A-201ENST00000254950 PRDM9Q9NQV7 894 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms