RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 RGS8P57771 180 aaPredicted RBP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 RPA4Q13156 261 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 MAB21L1Q13394 359 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 LHX8Q68G74 356 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 PLEKHM3Q6ZWE6 761 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 RD3Q7Z3Z2 195 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 TMC8Q8IU68 726 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 CHCHD4Q8N4Q1 142 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 GCDHQ92947 438 aaPredicted RBP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 DNAJA3Q96EY1 480 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 DEFB118Q96PH6 123 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 B3GAT2Q9NPZ5 323 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ASAH2Q9NR71 780 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 EIF3KQ9UBQ5 218 aaKnown RBP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 MGAT4AQ9UM21 535 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 HCFC2Q9Y5Z7 792 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 A0A075B6Q4 140 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 GTPBP1O00178 669 aaKnown RBP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 FAAHO00519 579 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 PITPNM1O00562 1244 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 SMAD9O15198 467 aaKnown RBP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ACRP10323 421 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ARSBP15848 533 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 TIMP2P16035 220 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 KELP23276 732 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 NOS3P29474 1203 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 OR3A3P47888 321 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 MLLT11Q13015 90 aaPredicted RBP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF311Q5JNZ3 666 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 SLC27A4Q6P1M0 643 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 PLBD1Q6P4A8 553 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 CHMP1BQ7LBR1 199 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 LAS2Q8IYD9 372 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 SLC38A6Q8IZM9 456 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 NXF2Q9GZY0 626 aaKnown RBP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 CHST8Q9H2A9 424 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 PSMD9O00233 223 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 EIF3FO00303 357 aaPredicted RBP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 SLCO2B1O94956 709 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ARHGEF15O94989 841 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 CLCNKAP51800 687 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 OR10A3P58181 314 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 TEAD2Q15562 447 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 FAM71E1Q6IPT2 247 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 RPTNQ6XPR3 784 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF783Q6ZMS7 281 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 CCDC149Q6ZUS6 474 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 PRICKLE2Q7Z3G6 844 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 CPOQ8IVL8 374 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 CCDC28AQ8IWP9 274 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 NRMQ8IXM6 262 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 LRRC20Q8TCA0 184 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ZSCAN5AQ9BUG6 496 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ELAC1Q9H777 363 aaKnown RBP11.29□□□□□ -0.6
USHBP1-201ENST00000252597 BRF2Q9HAW0 419 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 KCNE3Q9Y6H6 103 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 NPIPA5A0A0B4J1W7 369 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 A0A1W2PRG6 482 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 PCP4L1A6NKN8 68 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 HNRNPCL2B2RXH8 293 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 NPIPA7E9PJI5 369 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 J3QLW9 94 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 ERI3O43414 337 aaKnown RBP11.28□□□□□ -0.6
USHBP1-201ENST00000252597 TMPRSS11DO60235 418 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF780AO75290 641 aaPredicted RBP11.28□□□□□ -0.6
USHBP1-201ENST00000252597 HRGP04196 525 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 HMGN2P05204 90 aaKnown RBP11.28□□□□□ -0.6
USHBP1-201ENST00000252597 NPIPA8P0DM63 369 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF19P17023 458 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 PTPN2P17706 415 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 ATF4P18848 351 aaPredicted RBP11.28□□□□□ -0.6
USHBP1-201ENST00000252597 SLC6A11P48066 632 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 PCDH1Q08174 1060 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 ILKQ13418 452 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 GPR68Q15743 365 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 FNDC3BQ53EP0 1204 aaKnown RBP11.28□□□□□ -0.6
USHBP1-201ENST00000252597 SLX4IPQ5VYV7 408 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 LUZP2Q86TE4 346 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF433Q8N7K0 673 aaPredicted RBP11.28□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF671Q8TAW3 534 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 TBC1D20Q96BZ9 403 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 FERD3LQ96RJ6 166 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 GAL3ST1Q99999 423 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 C1QTNF6Q9BXI9 259 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 THSD1Q9NS62 852 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 NDUFB11Q9NX14 153 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 P2RX2Q9UBL9 471 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 REV1Q9UBZ9 1251 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 PPIEQ9UNP9 301 aaKnown RBP11.28□□□□□ -0.6
USHBP1-201ENST00000252597 PATJQ8NI35 1801 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 SNTNA6NMZ2 147 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 HMGN4O00479 90 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 RGS13O14921 159 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 HOXA2O43364 376 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 POU3F3P20264 500 aaPredicted RBP11.28□□□□□ -0.6
USHBP1-201ENST00000252597 SHC1P29353 583 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 ERP29P30040 261 aaKnown RBP11.28□□□□□ -0.6
USHBP1-201ENST00000252597 ETV6P41212 452 aa11.28□□□□□ -0.6
USHBP1-201ENST00000252597 P2RX3P56373 397 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms