RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 DUSP6Q16828 381 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 CAMKK1Q8N5S9 505 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 OR56A1Q8NGH5 318 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 TM9SF4Q92544 642 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 QRSL1Q9H0R6 528 aaKnown RBP17.61■□□□□ 0.41
CPSF3-201ENST00000238112 KLHL31Q9H511 634 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 XKR8Q9H6D3 395 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 ISYNA1Q9NPH2 558 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 ACSL5Q9ULC5 683 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 ENTPD4Q9Y227 616 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 GSTK1Q9Y2Q3 226 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 EXOSC1Q9Y3B2 195 aaKnown RBP17.61■□□□□ 0.41
CPSF3-201ENST00000238112 IGKV1-8A0A0C4DH67 115 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 ERI3O43414 337 aaKnown RBP17.61■□□□□ 0.41
CPSF3-201ENST00000238112 UBXN7O94888 489 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 DDOSTP39656 456 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 RPS5P46782 204 aaKnown RBP17.61■□□□□ 0.41
CPSF3-201ENST00000238112 HYAL2Q12891 473 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 TPBGQ13641 420 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 MINDY4Q4G0A6 757 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 PYDC2Q56P42 97 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 TYW3Q6IPR3 259 aaKnown RBP17.61■□□□□ 0.41
CPSF3-201ENST00000238112 KIAA1161Q6NSJ0 714 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 RRM2BQ7LG56 351 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 CCDC116Q8IYX3 515 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 ANKK1Q8NFD2 765 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 SNX18Q96RF0 628 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 MCOLN1Q9GZU1 580 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 AICDAQ9GZX7 198 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 MMP28Q9H239 520 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 ANKRA2Q9H9E1 313 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 ZDHHC4Q9NPG8 344 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 COL4A3Q01955 1670 aa17.61■□□□□ 0.41
CPSF3-201ENST00000238112 SMIM30A4D0T7 59 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 FAM172BPA6NC97 362 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 OTOL1A6NHN0 477 aaPredicted RBP17.6■□□□□ 0.41
CPSF3-201ENST00000238112 CENPXA8MT69 81 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 GUCY1B2O75343 617 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 FHP07954 510 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 CSF3P09919 207 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 WSCD2Q2TBF2 565 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 ZNF750Q32MQ0 723 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 ZNF311Q5JNZ3 666 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 TMEM107Q6UX40 140 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 ZNF730Q6ZMV8 503 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 QSOX2Q6ZRP7 698 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 GJD3Q8N144 294 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 OR8K5Q8NH50 307 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 TM9SF2Q99805 663 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 MACROD1Q9BQ69 325 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 IMP3Q9NV31 184 aaKnown RBP17.6■□□□□ 0.41
CPSF3-201ENST00000238112 MKI67P46013 3256 aaKnown RBP17.6■□□□□ 0.41
CPSF3-201ENST00000238112 A8MV72 311 aaPredicted RBP17.6■□□□□ 0.41
CPSF3-201ENST00000238112 PGRMC2O15173 223 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 PCDH8O95206 1070 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 ACP5P13686 325 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 GABRA5P31644 462 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 BCL6P41182 706 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 RAB28P51157 221 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 PRR5P85299 388 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 TRAM2Q15035 370 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 TBRG1Q3YBR2 411 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 SHFQ7M4L6 423 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 CACUL1Q86Y37 369 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 OR2A1Q8NGT9 310 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 MOAP1Q96BY2 351 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 C16orf58Q96GQ5 468 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 ST6GAL2Q96JF0 529 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 INSM2Q96T92 566 aaPredicted RBP17.6■□□□□ 0.41
CPSF3-201ENST00000238112 KATNB1Q9BVA0 655 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 CNIH4Q9P003 139 aa17.6■□□□□ 0.41
CPSF3-201ENST00000238112 C8orf89P0DMQ9 161 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 HIST1H1TP22492 207 aaPredicted RBP17.59■□□□□ 0.41
CPSF3-201ENST00000238112 IFNA8P32881 189 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 MAP4K2Q12851 820 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 TSPAN31Q12999 210 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 KRT33BQ14525 404 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 CLEC12AQ5QGZ9 265 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 PIP5KL1Q5T9C9 394 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 PRAMEF8Q5VWM4 474 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 PRAMEF7Q5VXH5 474 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 PRICKLE2Q7Z3G6 844 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 SYT14Q8NB59 555 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 OR8D4Q8NGM9 314 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 SPPL3Q8TCT6 385 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 NR4A3Q92570 626 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 KIAA1143Q96AT1 154 aaPredicted RBP17.59■□□□□ 0.41
CPSF3-201ENST00000238112 DMRTB1Q96MA1 342 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 PRR14Q9BWN1 585 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 SF3B6Q9Y3B4 125 aaKnown RBP17.59■□□□□ 0.41
CPSF3-201ENST00000238112 ATG4BQ9Y4P1 393 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 OR1A2Q9Y585 309 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 PTPRSQ13332 1948 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 A0A1W2PR48 441 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 TBC1D3BA6NDS4 549 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 HMX3A6NHT5 357 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 CPSF4LA6NMK7 179 aaKnown RBP17.59■□□□□ 0.41
CPSF3-201ENST00000238112 SYT5O00445 386 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 LRRTM2O43300 516 aa17.59■□□□□ 0.41
CPSF3-201ENST00000238112 ALPPP05187 535 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms