RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PPP3R1P63098 170 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 FUT5Q11128 374 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 RAB40BQ12829 278 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 DEFB115Q30KQ5 88 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 ZNF750Q32MQ0 723 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 IL20RBQ6UXL0 311 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 IKBIPQ70UQ0 350 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 MARCH9Q86YJ5 346 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 DNAJC5GQ8N7S2 189 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 AP3S1Q92572 193 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 MAP6Q96JE9 813 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 PPIL3Q9H2H8 161 aaKnown RBP11.68□□□□□ -0.54
NUP88-201ENST00000225696 FGF20Q9NP95 211 aaPredicted RBP11.68□□□□□ -0.54
NUP88-201ENST00000225696 TRPC4Q9UBN4 977 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 NTNG1Q9Y2I2 539 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 GPR55Q9Y2T6 319 aaPredicted RBP11.68□□□□□ -0.54
NUP88-201ENST00000225696 KCNE3Q9Y6H6 103 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 CDH10Q9Y6N8 788 aa11.68□□□□□ -0.54
NUP88-201ENST00000225696 MYO7AQ13402 2215 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 COL4A3Q01955 1670 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 A0A1W2PS29 197 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 GABRPO00591 440 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 SLC2A10O95528 541 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 NR2F1P10589 423 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ELK1P19419 428 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 SLC1A3P43003 542 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 RECQLP46063 649 aaPredicted RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 PRKAG1P54619 331 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 KLHL22Q53GT1 634 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 PRAMEF14Q5SWL7 426 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 PRAMEF13Q5VWM6 474 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 KHDRBS2Q5VWX1 349 aaKnown RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 TIGD3Q6B0B8 471 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 SLC30A6Q6NXT4 461 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 CD300LDQ6UXZ3 194 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 TMEM91Q6ZNR0 172 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ASB18Q6ZVZ8 466 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 PLCZ1Q86YW0 608 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 SIX5Q8N196 739 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 NEIL3Q8TAT5 605 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 RAET1EQ8TD07 263 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ZFPM2Q8WW38 1151 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ZNF689Q96CS4 500 aaPredicted RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 MED30Q96HR3 178 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 MRGPRX3Q96LB0 322 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ZNF607Q96SK3 696 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ZDHHC5Q9C0B5 715 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 C11orf49Q9H6J7 331 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 NIPAL2Q9H841 368 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 MRPS18AQ9NVS2 196 aaKnown RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 HCFC1R1Q9NWW0 138 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 CLCA2Q9UQC9 943 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 PCDHGB7Q9Y5F8 929 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 TRDV1A0A1B0GX56 115 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 A0A1W2PQ72 361 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 SPINT1O43278 529 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 PROM1O43490 865 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 PRKAR1AP10644 381 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ACADMP11310 421 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 TYRP14679 529 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 MMP12P39900 470 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 BUD31P41223 144 aaPredicted RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 SMSP52788 366 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 COX10Q12887 443 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ENTPD8Q5MY95 495 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 EOGTQ5NDL2 527 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 FAM205BPQ63HN1 556 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ZNF57Q68EA5 555 aaPredicted RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 KIAA1161Q6NSJ0 714 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 UBE3DQ7Z6J8 389 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 TIGD4Q8IY51 512 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 FAM109AQ8N4B1 249 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 C7orf57Q8NEG2 295 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 SUN5Q8TC36 379 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 FAM46AQ96IP4 442 aaKnown RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 MACROD1Q9BQ69 325 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 ISG20L2Q9H9L3 353 aaKnown RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 POLMQ9NP87 494 aaPredicted RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 MAT2BQ9NZL9 334 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 DKK3Q9UBP4 350 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 TAC3Q9UHF0 121 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 LIPT1Q9Y234 373 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 GSTK1Q9Y2Q3 226 aa11.67□□□□□ -0.54
NUP88-201ENST00000225696 SIRT4Q9Y6E7 314 aaPredicted RBP11.67□□□□□ -0.54
NUP88-201ENST00000225696 KIF26AQ9ULI4 1882 aaPredicted RBP11.66□□□□□ -0.54
NUP88-201ENST00000225696 DENND4CQ5VZ89 1909 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 LEUTXA8MZ59 168 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 INMT-MINDY4F8WBC2 141 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 FABP7O15540 132 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 PDE9AO76083 593 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 SYN1P17600 705 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 ACADLP28330 430 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 CSTF1Q05048 431 aaKnown RBP11.66□□□□□ -0.54
NUP88-201ENST00000225696 MZT2BQ6NZ67 158 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 SLC36A4Q6YBV0 504 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 PARS2Q7L3T8 475 aaKnown RBP11.66□□□□□ -0.54
NUP88-201ENST00000225696 AMIGO1Q86WK6 493 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 C9orf62Q8N4C0 152 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 PLA2G15Q8NCC3 412 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 SLC37A3Q8NCC5 494 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms