RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CCNI2Q6ZMN8 369 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 RCOR2Q8IZ40 523 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 LINC00471Q8N535 108 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SMIM20Q8N5G0 67 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ASB13Q8WXK3 278 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 TXNDC15Q96J42 360 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CNIH4Q9P003 139 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 PFASO15067 1338 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 AGRNO00468 2067 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 OR14I1A6ND48 311 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SPATA31C2B4DYI2 1134 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SYT7O43581 403 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CSF2P04141 144 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 UCHL1P09936 223 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 BSGP35613 385 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 PPIGQ13427 754 aaKnown RBP eCLIP3.4□□□□□ -1.878e-7■■■□□ 15.7
SCN1A-221ENST00000641996 OTUD3Q5T2D3 398 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 VSIG10LQ86VR7 867 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CYB561A3Q8NBI2 242 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 OR13C5Q8NGS8 318 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF419Q96HQ0 510 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 DPH7Q9BTV6 452 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SPNS1Q9H2V7 528 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 PLSCR3Q9NRY6 295 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 NUDT5Q9UKK9 219 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 LRRK2Q5S007 2527 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ZFHX2Q9C0A1 2572 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 DRGXA6NNA5 263 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF821O75541 412 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CTDNEP1O95476 244 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SHBGP04278 402 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 OR8U9P0C7N5 309 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 TFE3P19532 575 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 NDUFV1P49821 464 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ACTR2P61160 394 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 MAB21L1Q13394 359 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 GNMTQ14749 295 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SYTL3Q4VX76 610 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 TANGO2Q6ICL3 276 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 PLBD1Q6P4A8 553 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 LRFN4Q6PJG9 635 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CYHR1Q6ZMK1 362 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 MRPL41Q8IXM3 137 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF548Q8NEK5 533 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 OR9Q2Q8NGE9 314 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM234Q8WY98 164 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 MIB2Q96AX9 1013 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CHFRQ96EP1 664 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SNAP91O60641 907 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RP2O75695 350 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SLC6A12P48065 614 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ACTA2P62736 377 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ACTC1P68032 377 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ACTA1P68133 377 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 STEAP1BQ6NZ63 245 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM65Q6PI78 240 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DHDDSQ86SQ9 333 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TRIM48Q8IWZ4 208 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DMRTC2Q8IXT2 367 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 GJD3Q8N144 294 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZFP28Q8NHY6 868 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR2J1Q9GZK6 312 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 P4HTMQ9NXG6 502 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 STEAP1Q9UHE8 339 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TLN1Q9Y490 2541 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 KIAA1324LA8MWY0 1029 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 IGSF6O95976 241 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 GP1BAP07359 652 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 AREGP15514 252 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DRD5P21918 477 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF57Q68EA5 555 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 KIAA0895LQ68EN5 471 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM144Q7Z5S9 345 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR51A7Q8NH64 312 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FAM162AQ96A26 154 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TSPAN10Q9H1Z9 355 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SEMA6BQ9H3T3 888 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 NANSQ9NR45 359 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR14J1Q9UGF5 321 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM184BQ9Y519 407 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 NPTNQ9Y639 398 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 VWA8A3KMH1 1905 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RIF1Q5UIP0 2472 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 WDR17Q8IZU2 1322 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 A0A0A6YYJ9 748 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 METTL15A6NJ78 407 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 GRXCR1A8MXD5 290 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SLCO1B7G3V0H7 640 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 QSOX1O00391 747 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DUX1O43812 170 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR7C2O60412 319 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PRKRAO75569 313 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SLC22A3O75751 556 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZMPSTE24O75844 475 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PRF1P14222 555 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FCARP24071 287 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 KIR3DL2P43630 455 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SLC13A2Q13183 592 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 MAD2L1Q13257 205 aaPredicted RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms