RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 NR2C1P13056 603 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CYP11B1P15538 503 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 VCLP18206 1134 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 UGT1A6P19224 532 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 FUT3P21217 361 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 PPP2R1AP30153 589 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 AXLP30530 894 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SERPINB6P35237 376 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SAA4P35542 130 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SOAT1P35610 550 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 FNTAP49354 379 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 STARP49675 285 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 NT5C2P49902 561 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 PPOXP50336 477 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CAV2P51636 162 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CCL11P51671 97 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SGSHP51688 502 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ARHGDIBP52566 201 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SLC12A3P55017 1021 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 DIO3P55073 304 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 LIM2P55344 173 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 STX17P56962 302 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 LINC00315P59091 139 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ST8SIA6P61647 398 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 RPS4XP62701 263 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 HERV-K104P63124 156 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ROR1Q01973 937 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CD47Q08722 323 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 C17orf67Q0P5P2 114 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 GTF3C1Q12789 2109 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ASAH1Q13510 395 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 GIT2Q14161 759 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SMC1AQ14683 1233 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 SLC10A1Q14973 349 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 HERPUD1Q15011 391 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 STXBP2Q15833 593 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 STX1AQ16623 288 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZSWIM7Q19AV6 140 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZNF630Q2M218 657 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 HKDC1Q2TB90 917 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 GLYR1Q49A26 553 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 ACSF3Q4G176 576 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 AARDQ4LEZ3 155 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZNF658BQ4V348 819 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 MPPE1Q53F39 396 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ODF2Q5BJF6 829 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TFDP3Q5H9I0 405 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 FAM120AOSQ5T036 256 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZNF658Q5TYW1 1059 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 AGBL2Q5U5Z8 902 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 LRRC38Q5VT99 294 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 C1orf189Q5VU69 101 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SLC22A10Q63ZE4 541 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZNF57Q68EA5 555 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 SNRNP48Q6IEG0 339 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 CDC42EP5Q6NZY7 148 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 LEG1Q6P5S2 330 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ALKBH5Q6P6C2 394 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 MFSD7Q6UXD7 560 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TFAP2EQ6VUC0 442 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 HACD2Q6Y1H2 254 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 GBP6Q6ZN66 633 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 LINC00696Q6ZRV3 163 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 MSANTD1Q6ZTZ1 278 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 FAM47EQ6ZV65 393 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 C1orf186Q6ZWK4 172 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 PIWIL3Q7Z3Z3 882 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 GALNTL5Q7Z4T8 443 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SPATA21Q7Z572 469 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ADAMTSL2Q86TH1 951 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 HOOK3Q86VS8 718 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 AMZ2Q86W34 360 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CCDC83Q8IWF9 413 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SKA3Q8IX90 412 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 C9orf40Q8IXQ3 194 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 C4orf19Q8IY42 314 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SYCP3Q8IZU3 236 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZNF444Q8N0Y2 327 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 OR8H3Q8N146 312 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 LYPD1Q8N2G4 141 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 NME8Q8N427 588 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SFRP1Q8N474 314 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 C14orf178Q8N769 122 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 CCDC89Q8N998 374 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 NAT8LQ8N9F0 302 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 Q8N9G6 341 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 Q8N9L7 120 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZNF397Q8NF99 534 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 OR2L5Q8NG80 312 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 OR4F17Q8NGA8 305 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 OR4A16Q8NH70 328 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CCDC26Q8TAB7 109 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 FBXO30Q8TB52 745 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 FBXO25Q8TCJ0 367 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ADAMTS16Q8TE57 1224 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 C7orf33Q8WU49 177 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 UBTD2Q8WUN7 234 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 DEPDC1BQ8WUY9 529 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 RNF138Q8WVD3 245 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 HAS2Q92819 552 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms