RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MYOTQ9UBF9 498 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CLEC4EQ9ULY5 219 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 HSBP1L1C9JCN9 74 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 HTRA2O43464 458 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CRYZL1O95825 349 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 EPOP01588 193 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 HOXC13P31276 330 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 MAZP56270 477 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 EXT1Q16394 746 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 AMIGO2Q86SJ2 522 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 IL17RDQ8NFM7 739 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CDK15Q96Q40 435 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SDCBP2Q9H190 292 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TBCCD1Q9NVR7 557 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CACNG4Q9UBN1 327 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 OARD1Q9Y530 152 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 MRC1P22897 1456 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CCDC163A0A0D9SF12 145 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CRYM-AS1A6NIL9 109 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 LILRB5O75023 590 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 G6PDP11413 515 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 RAB4AP20338 218 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 EDNRBP24530 442 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 EPHA5P54756 1037 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ADARP55265 1226 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ZFP69Q49AA0 526 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM31Q5JXX7 168 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TOMM5Q8N4H5 51 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ZC3H10Q96K80 434 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 LRRN3Q9H3W5 708 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TAS2R10Q9NYW0 307 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 NDUFAF4Q9P032 175 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 PMF1-BGLAPU3KQ54 211 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SEC14L2O76054 403 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 MPC1LP0DKB6 136 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 AOC1P19801 751 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 WDR5P61964 334 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 YPEL5P62699 121 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 NKX3-2P78367 333 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 KCNC4Q03721 635 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SLC36A2Q495M3 483 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 FAM205BPQ63HN1 556 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 GOLGA7Q7Z5G4 137 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 UBE2Q1Q7Z7E8 422 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 LILRB2Q8N423 598 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SGTBQ96EQ0 304 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SECISBP2Q96T21 854 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SLC6A16Q9GZN6 736 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 OR51B5Q9H339 312 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 XKR8Q9H6D3 395 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ZFP57Q9NU63 452 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF221Q9UK13 617 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SLC35A3Q9Y2D2 325 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SPO11Q9Y5K1 396 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 C6orf47O95873 294 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 IFNA10P01566 189 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM225BP0DP42 221 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 PTPN6P29350 595 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SHC2P98077 582 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 RBM20Q5T481 1227 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 PLCXD3Q63HM9 321 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 NYAP1Q6ZVC0 841 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 NIPA2Q8N8Q9 360 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 FAM83FQ8NEG4 500 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 LACRTQ9GZZ8 138 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 C12orf65Q9H3J6 166 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CWH43Q9H720 699 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 H3BNX3 289 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 YES1P07947 543 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 C1GALT1C1LP0DN25 315 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 NPR2P20594 1047 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 PTGER4P35408 488 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 TBPL1P62380 186 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF460Q14592 562 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 C6orf15Q6UXA7 325 aaPredicted RBP5.84□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF598Q86UK7 904 aaKnown RBP5.84□□□□□ -1.48
SCN1A-217ENST00000637988 TRIM74Q86UV6 250 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 ALYREFQ86V81 257 aaKnown RBP5.84□□□□□ -1.48
SCN1A-217ENST00000637988 TMEFF1Q8IYR6 380 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 FGF13Q92913 245 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 MCHR1Q99705 422 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 DNAJB4Q9UDY4 337 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 FBXO4Q9UKT5 387 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 SCN11AQ9UI33 1791 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 SHPRHQ149N8 1683 aa5.84□□□□□ -1.48
SCN1A-217ENST00000637988 PTPRZ1P23471 2315 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF587BE7ETH6 402 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SIGLEC6O43699 453 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 ONECUT3O60422 494 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SLC19A2O60779 497 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SLC43A1O75387 559 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 CNIH1O95406 144 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 NPPAP01160 153 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FGF4P08620 206 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 CEBPBP17676 345 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 PAX7P23759 505 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 DNAJB1P25685 340 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 PXNP49023 591 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FOLH1Q04609 750 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms