RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 MFSD4BQ5TF39 518 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 HMBOX1Q6NT76 420 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 LAPTM4BQ86VI4 370 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 SLC44A2Q8IWA5 706 aaPredicted RBP17.19■□□□□ 0.34
CLN3-254ENST00000637050 SLC16A11Q8NCK7 471 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 STT3BQ8TCJ2 826 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 ADAMTS15Q8TE58 950 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 TSLPQ969D9 159 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 TAMM41Q96BW9 452 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 SLC35A4Q96G79 324 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 VN1R1Q9GZP7 353 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 AGPAT4Q9NRZ5 378 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 ADPRHL2Q9NX46 363 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 SLC39A1Q9NY26 324 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 TCRBV16S1A1N1A0A5B0 115 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 M0QX08 132 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 MEN1O00255 615 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 TPST1O60507 370 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 COQ9O75208 318 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 AGR2O95994 175 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 IFNA14P01570 189 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 IFNA16P05015 189 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 NR2F1P10589 423 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 ACP2P11117 423 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 ZNF28P17035 718 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 FASP25445 335 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 MAP3K8P41279 467 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 OCA2Q04671 838 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 FUT7Q11130 342 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 GNA13Q14344 377 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 RPS26P11Q5JNZ5 115 aaPredicted RBP17.18■□□□□ 0.34
CLN3-254ENST00000637050 HEPHL1Q6MZM0 1159 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 OVCH1Q7RTY7 1134 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 ANKFN1Q8N957 763 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 CDRT4Q8N9R6 151 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 PLPP5Q8NEB5 264 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 OR52R1Q8NGF1 315 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 OR10Q1Q8NGQ4 319 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 HOXB13Q92826 284 aaPredicted RBP17.18■□□□□ 0.34
CLN3-254ENST00000637050 LIN37Q96GY3 246 aaPredicted RBP17.18■□□□□ 0.34
CLN3-254ENST00000637050 LRFN5Q96NI6 719 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 TREX2Q9BQ50 279 aaPredicted RBP17.18■□□□□ 0.34
CLN3-254ENST00000637050 BCL2L10Q9HD36 194 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 C14orf105Q9NVL8 296 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 GIN1Q9NXP7 522 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 MKL2Q9ULH7 1088 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 LIPT1Q9Y234 373 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 LOXL2Q9Y4K0 774 aa17.18■□□□□ 0.34
CLN3-254ENST00000637050 SYNDIG1LA6NDD5 238 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 HRKO00198 91 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 SUV39H1O43463 412 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 SEMG1P04279 462 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 CAPNS1P04632 268 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 ZGLP1P0C6A0 271 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 VHLP40337 213 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 CRISP3P54108 245 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 SELENOWP63302 87 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 ZNF267Q14586 743 aaPredicted RBP17.17■□□□□ 0.34
CLN3-254ENST00000637050 TRIP10Q15642 601 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 PRAMEF8Q5VWM4 474 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 PRAMEF7Q5VXH5 474 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 WDR53Q7Z5U6 358 aaPredicted RBP17.17■□□□□ 0.34
CLN3-254ENST00000637050 PTPMT1Q8WUK0 201 aaPredicted RBP17.17■□□□□ 0.34
CLN3-254ENST00000637050 SLC9A6Q92581 669 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 PMEPA1Q969W9 287 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 HSH2DQ96JZ2 352 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 PIGUQ9H490 435 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 RUBCNLQ9H714 662 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 SPEGQ15772 3267 aa17.17■□□□□ 0.34
CLN3-254ENST00000637050 VSTM2BA6NLU5 285 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 CSO75390 466 aaKnown RBP17.16■□□□□ 0.34
CLN3-254ENST00000637050 PDE9AO76083 593 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 MT-CO3P00414 261 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 MT-ND1P03886 318 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 CHRM4P08173 479 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 SSTR4P31391 388 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 MAGEA2P43356 314 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 EMDP50402 254 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 NSDHLQ15738 373 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 ATP6AP1Q15904 470 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 DUSP5Q16690 384 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 ATAD3BQ5T9A4 648 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 OGFRL1Q5TC84 451 aaPredicted RBP17.16■□□□□ 0.34
CLN3-254ENST00000637050 LCN10Q6JVE6 187 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 VTCN1Q7Z7D3 282 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 AMIGO2Q86SJ2 522 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 PRSS58Q8IYP2 241 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 BBS10Q8TAM1 723 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 CDS1Q92903 461 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 FKBP10Q96AY3 582 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 TRNT1Q96Q11 434 aaKnown RBP17.16■□□□□ 0.34
CLN3-254ENST00000637050 STACQ99469 402 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 DOHHQ9BU89 302 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 SLC26A1Q9H2B4 701 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 DUSP22Q9NRW4 184 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 EXD2Q9NVH0 621 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 IFT80Q9P2H3 777 aaPredicted RBP17.16■□□□□ 0.34
CLN3-254ENST00000637050 PCDHGA8Q9Y5G5 932 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 C17orf105B2RV13 164 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 ALBP02768 609 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms