RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 ACTL6AO96019 429 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 HSD3B1P14060 373 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 HSD3B2P26439 372 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 UQCRC1P31930 480 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 PSPHP78330 225 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 TMEM64Q6YI46 380 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 ZNF771Q7L3S4 317 aaPredicted RBP16.84■□□□□ 0.29
CLN3-241ENST00000635861 ZZZ3Q8IYH5 903 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 TNIP2Q8NFZ5 429 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 OR1J4Q8NGS1 313 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 ZNF483Q8TF39 744 aaPredicted RBP16.84■□□□□ 0.29
CLN3-241ENST00000635861 SELENOMQ8WWX9 145 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 CTHRC1Q96CG8 243 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 LCORQ96JN0 433 aaPredicted RBP16.84■□□□□ 0.29
CLN3-241ENST00000635861 NSUN5Q96P11 429 aaKnown RBP16.84■□□□□ 0.29
CLN3-241ENST00000635861 GNRHR2Q96P88 292 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 NXF5Q9H1B4 397 aaKnown RBP16.84■□□□□ 0.29
CLN3-241ENST00000635861 METTL7AQ9H8H3 244 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 CALHM2Q9HA72 323 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 PRODH2Q9UF12 536 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 PRDM4Q9UKN5 801 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 SLC12A4Q9UP95 1085 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 MBD3L4A6NDZ8 208 aaPredicted RBP16.83■□□□□ 0.28
CLN3-241ENST00000635861 MBD3L3A6NE82 208 aaPredicted RBP16.83■□□□□ 0.28
CLN3-241ENST00000635861 MBD3L5A6NJ08 208 aaPredicted RBP16.83■□□□□ 0.28
CLN3-241ENST00000635861 ACSL3O95573 720 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 BMP5P22003 454 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 PTPN6P29350 595 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 IST1P53990 364 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 GALNT1Q10472 559 aaPredicted RBP16.83■□□□□ 0.28
CLN3-241ENST00000635861 BICRALQ6AI39 1079 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 LCA5Q86VQ0 697 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 KIF18BQ86Y91 864 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 NAXEQ8NCW5 288 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 CHDHQ8NE62 594 aaPredicted RBP16.83■□□□□ 0.28
CLN3-241ENST00000635861 MBD3L2Q8NHZ7 208 aaPredicted RBP16.83■□□□□ 0.28
CLN3-241ENST00000635861 ERP27Q96DN0 273 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 FMO2Q99518 471 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 UGT2B28Q9BY64 529 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 BRINP2Q9C0B6 783 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 ACBD3Q9H3P7 528 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 RASSF1Q9NS23 344 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 MAT2BQ9NZL9 334 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 CRIM1Q9NZV1 1036 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 DMGDHQ9UI17 866 aaKnown RBP16.83■□□□□ 0.28
CLN3-241ENST00000635861 CAMK2AQ9UQM7 478 aa16.83■□□□□ 0.28
CLN3-241ENST00000635861 BCAS2O75934 225 aaPredicted RBP16.82■□□□□ 0.28
CLN3-241ENST00000635861 IL18BPO95998 194 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 PDYNP01213 254 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 BMP7P18075 431 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 OPRM1P35372 400 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 SORDQ00796 357 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 MGAT2Q10469 447 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 RCAN2Q14206 197 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 TOMM20Q15388 145 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 POMZP3Q6PJE2 187 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 SCIMPQ6UWF3 145 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 SAMD14Q8IZD0 417 aaPredicted RBP16.82■□□□□ 0.28
CLN3-241ENST00000635861 CNPY4Q8N129 248 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 ZPLD1Q8TCW7 415 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 HGDQ93099 445 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 ABTB1Q969K4 478 aaPredicted RBP16.82■□□□□ 0.28
CLN3-241ENST00000635861 TM4SF18Q96CE8 201 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 RMND5BQ96G75 393 aaPredicted RBP16.82■□□□□ 0.28
CLN3-241ENST00000635861 ZFP3Q96NJ6 502 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 OSBPL11Q9BXB4 747 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 SHCBP1LQ9BZQ2 653 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 CLEC4MQ9H2X3 399 aaPredicted RBP16.82■□□□□ 0.28
CLN3-241ENST00000635861 BCAP29Q9UHQ4 241 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 ST6GALNAC2Q9UJ37 374 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 ZNF780BQ9Y6R6 833 aa16.82■□□□□ 0.28
CLN3-241ENST00000635861 ZNF469Q96JG9 3925 aaPredicted RBP16.82■□□□□ 0.28
CLN3-241ENST00000635861 A6NNC1 897 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 SNPHO15079 494 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 TO15178 435 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 ABCB7O75027 752 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 ERAL1O75616 437 aaKnown RBP16.81■□□□□ 0.28
CLN3-241ENST00000635861 CBR3O75828 277 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 DRD5P21918 477 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 PPICP45877 212 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 ZNF136P52737 540 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 PLCXD2Q0VAA5 305 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 CSTF3Q12996 717 aaKnown RBP16.81■□□□□ 0.28
CLN3-241ENST00000635861 DAZAP2Q15038 168 aaPredicted RBP16.81■□□□□ 0.28
CLN3-241ENST00000635861 LGSNQ5TDP6 509 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 LETMD1Q6P1Q0 360 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 PRR22Q8IZ63 422 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 ZNF675Q8TD23 568 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 DCAKDQ8WVC6 231 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 KLHL29Q96CT2 875 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 OMA1Q96E52 524 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 WDYHV1Q96HA8 205 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 ITPAQ9BY32 194 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 VPS29Q9UBQ0 182 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 MCM8Q9UJA3 840 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 NFU1Q9UMS0 254 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 EXO1Q9UQ84 846 aaKnown RBP16.81■□□□□ 0.28
CLN3-241ENST00000635861 DTX4Q9Y2E6 619 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 STK38LQ9Y2H1 464 aa16.81■□□□□ 0.28
CLN3-241ENST00000635861 SLC6A5Q9Y345 797 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms