RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TEKT2Q9UIF3 430 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 FBXL5Q9UKA1 691 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 ERVK-19Q9WJR5 959 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 ITM2BQ9Y287 266 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 FAM149AA5PLN7 773 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 OOEPA6NGQ2 149 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 SDR42E2A6NKP2 422 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 MEI4A8MW99 385 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 OR7A17O14581 309 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 ABCD4O14678 606 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 ICOSLGO75144 302 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 SLU7O95391 586 aaKnown RBP1.47□□□□□ -2.17
SCN1A-208ENST00000625916 CPA3P15088 417 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 KRTAP12-4P60329 112 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 TSPY1Q01534 308 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 MEF2DQ14814 521 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 OR1C1Q15619 314 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 WSCD2Q2TBF2 565 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 KPRPQ5T749 579 aaPredicted RBP1.47□□□□□ -2.17
SCN1A-208ENST00000625916 MFSD7Q6UXD7 560 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 STOX1Q6ZVD7 989 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 TUSC5Q8IXB3 177 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 KLHDC8AQ8IYD2 350 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 CORO2AQ92828 525 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 TADA1Q96BN2 335 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 CCDC114Q96M63 670 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 S1PR3Q99500 378 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 SSX3Q99909 188 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 CITED2Q99967 270 aaPredicted RBP1.47□□□□□ -2.17
SCN1A-208ENST00000625916 FAM173AQ9BQD7 235 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 NICN1Q9BSH3 213 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 DPH7Q9BTV6 452 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 THUMPD3Q9BV44 507 aaKnown RBP1.47□□□□□ -2.17
SCN1A-208ENST00000625916 PLA2G12AQ9BZM1 189 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 EDEM3Q9BZQ6 932 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 PTGES2Q9H7Z7 377 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 SLC25A19Q9HC21 320 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 MIS18AQ9NYP9 233 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 SEPT10Q9P0V9 454 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 GIMAP2Q9UG22 337 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 CACNG2Q9Y698 323 aa1.47□□□□□ -2.17
SCN1A-208ENST00000625916 TRBV6-6A0A0A6YYG2 114 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 HTATSF1O43719 755 aaKnown RBP1.46□□□□□ -2.18
SCN1A-208ENST00000625916 CPNE6O95741 557 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 HSPA4LO95757 839 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 GAS8O95995 478 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 PGK1P00558 417 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 GH1P01241 217 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 EPOP01588 193 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 IGLV3-19P01714 112 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 MBL2P11226 248 aaPredicted RBP1.46□□□□□ -2.18
SCN1A-208ENST00000625916 SCG2P13521 617 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 TBPP20226 339 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 IGHV1-2P23083 117 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 OR1D2P34982 312 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 MAGEB1P43366 347 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 OR1D4P47884 311 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 ALDH3B2P48448 385 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 UCP2P55851 309 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 KCNK10P57789 538 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 PAX5Q02548 391 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 HEPACAMQ14CZ8 416 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 RPS6KA1Q15418 735 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 TRADDQ15628 312 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 LY6EQ16553 131 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 MPP7Q5T2T1 576 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 IGFL1Q6UW32 110 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 FAM47EQ6ZV65 393 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 ITIH5Q86UX2 942 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 MCOLN2Q8IZK6 566 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 ATAD1Q8NBU5 361 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 OR7G3Q8NG95 312 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 RFESDQ8TAC1 157 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 GGHQ92820 318 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 ERP27Q96DN0 273 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 SLC35E1Q96K37 410 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 GUCD1Q96NT3 240 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 SPAG8Q99932 426 aaPredicted RBP1.46□□□□□ -2.18
SCN1A-208ENST00000625916 AGPAT1Q99943 283 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 TSSK1BQ9BXA7 367 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 NUSAP1Q9BXS6 441 aaKnown RBP1.46□□□□□ -2.18
SCN1A-208ENST00000625916 CARD9Q9H257 536 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 TMEM206Q9H813 350 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 WFDC1Q9HC57 220 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 TUFT1Q9NNX1 390 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 PSORS1C1Q9UIG5 152 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 LEF1Q9UJU2 399 aaPredicted RBP1.46□□□□□ -2.18
SCN1A-208ENST00000625916 CDH7Q9ULB5 785 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 LTBP1Q14766 1721 aa1.46□□□□□ -2.18
SCN1A-208ENST00000625916 SLIT3O75094 1523 aa1.45□□□□□ -2.18
SCN1A-208ENST00000625916 FGD5Q6ZNL6 1462 aa1.45□□□□□ -2.18
SCN1A-208ENST00000625916 KIAA1217Q5T5P2 1943 aa1.45□□□□□ -2.18
SCN1A-208ENST00000625916 SH3PXD2BA1X283 911 aa1.45□□□□□ -2.18
SCN1A-208ENST00000625916 H0YIG0 161 aa1.45□□□□□ -2.18
SCN1A-208ENST00000625916 TSPAN2O60636 221 aa1.45□□□□□ -2.18
SCN1A-208ENST00000625916 GLCEO94923 617 aa1.45□□□□□ -2.18
SCN1A-208ENST00000625916 WNT2P09544 360 aa1.45□□□□□ -2.18
SCN1A-208ENST00000625916 TPBGLP0DKB5 382 aa1.45□□□□□ -2.18
SCN1A-208ENST00000625916 FRKP42685 505 aaPredicted RBP1.45□□□□□ -2.18
SCN1A-208ENST00000625916 RPS10P46783 165 aaKnown RBP1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms