RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 PAK1IP1Q9NWT1 392 aaPredicted RBP11□□□□□ -0.65
VRK3-223ENST00000601341 IRAK4Q9NWZ3 460 aa11□□□□□ -0.65
VRK3-223ENST00000601341 KIF17Q9P2E2 1029 aa11□□□□□ -0.65
VRK3-223ENST00000601341 FTSJ1Q9UET6 329 aa11□□□□□ -0.65
VRK3-223ENST00000601341 ATXN7L1Q9ULK2 861 aaPredicted RBP11□□□□□ -0.65
VRK3-223ENST00000601341 ASB4Q9Y574 426 aa11□□□□□ -0.65
VRK3-223ENST00000601341 CUL9Q8IWT3 2517 aa11□□□□□ -0.65
VRK3-223ENST00000601341 ASXL3Q9C0F0 2248 aa11□□□□□ -0.65
VRK3-223ENST00000601341 ARRDC5A6NEK1 342 aa11□□□□□ -0.65
VRK3-223ENST00000601341 CASC3O15234 703 aaKnown RBP11□□□□□ -0.65
VRK3-223ENST00000601341 TBX19O60806 448 aa11□□□□□ -0.65
VRK3-223ENST00000601341 LRP3O75074 770 aa11□□□□□ -0.65
VRK3-223ENST00000601341 TNFRSF21O75509 655 aa11□□□□□ -0.65
VRK3-223ENST00000601341 CPSF4O95639 269 aaKnown RBP11□□□□□ -0.65
VRK3-223ENST00000601341 B3GALT4O96024 378 aa11□□□□□ -0.65
VRK3-223ENST00000601341 GP1BAP07359 652 aa11□□□□□ -0.65
VRK3-223ENST00000601341 MSL3P1P0C860 447 aa11□□□□□ -0.65
VRK3-223ENST00000601341 ANXA8P13928 327 aa11□□□□□ -0.65
VRK3-223ENST00000601341 ACP1P24666 158 aa11□□□□□ -0.65
VRK3-223ENST00000601341 CLK3P49761 638 aaKnown RBP11□□□□□ -0.65
VRK3-223ENST00000601341 ST13P50502 369 aaKnown RBP11□□□□□ -0.65
VRK3-223ENST00000601341 BMXP51813 675 aa11□□□□□ -0.65
VRK3-223ENST00000601341 GP2P55259 537 aaKnown RBP11□□□□□ -0.65
VRK3-223ENST00000601341 SKP1P63208 163 aa11□□□□□ -0.65
VRK3-223ENST00000601341 NPRL3Q12980 569 aa11□□□□□ -0.65
VRK3-223ENST00000601341 MAD2L1BPQ15013 274 aaPredicted RBP11□□□□□ -0.65
VRK3-223ENST00000601341 CSRP2Q16527 193 aa11□□□□□ -0.65
VRK3-223ENST00000601341 CTF1Q16619 201 aa11□□□□□ -0.65
VRK3-223ENST00000601341 ZNF630Q2M218 657 aaPredicted RBP11□□□□□ -0.65
VRK3-223ENST00000601341 GARNL3Q5VVW2 1013 aa11□□□□□ -0.65
VRK3-223ENST00000601341 NIPAL1Q6NVV3 410 aa11□□□□□ -0.65
VRK3-223ENST00000601341 ZNF574Q6ZN55 896 aaPredicted RBP11□□□□□ -0.65
VRK3-223ENST00000601341 S100ZQ8WXG8 99 aa11□□□□□ -0.65
VRK3-223ENST00000601341 TANKQ92844 425 aa11□□□□□ -0.65
VRK3-223ENST00000601341 PLEKHA8Q96JA3 519 aa11□□□□□ -0.65
VRK3-223ENST00000601341 GFM1Q96RP9 751 aaKnown RBP11□□□□□ -0.65
VRK3-223ENST00000601341 SYNDIG1Q9H7V2 258 aa11□□□□□ -0.65
VRK3-223ENST00000601341 ENAMQ9NRM1 1142 aa11□□□□□ -0.65
VRK3-223ENST00000601341 TEX10Q9NXF1 929 aaPredicted RBP11□□□□□ -0.65
VRK3-223ENST00000601341 EHD3Q9NZN3 535 aa11□□□□□ -0.65
VRK3-223ENST00000601341 NCDNQ9UBB6 729 aa11□□□□□ -0.65
VRK3-223ENST00000601341 WARS2Q9UGM6 360 aaKnown RBP11□□□□□ -0.65
VRK3-223ENST00000601341 ATG4BQ9Y4P1 393 aa11□□□□□ -0.65
VRK3-223ENST00000601341 PCDHGA10Q9Y5H3 936 aa11□□□□□ -0.65
VRK3-223ENST00000601341 MDC1Q14676 2089 aaKnown RBP10.99□□□□□ -0.65
VRK3-223ENST00000601341 MYO1GB0I1T2 1018 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 RGS10O43665 173 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 GALR3O60755 368 aaPredicted RBP10.99□□□□□ -0.65
VRK3-223ENST00000601341 BCAS1O75363 584 aaPredicted RBP10.99□□□□□ -0.65
VRK3-223ENST00000601341 KRT75O95678 551 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 CTSBP07858 339 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 CD59P13987 128 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 SERPINB10P48595 397 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 ALDH9A1P49189 494 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 MVDP53602 400 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 FAM53BQ14153 422 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 KCNAB1Q14722 419 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 GRM7Q14831 915 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 CRB2Q5IJ48 1285 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 TMPRSS9Q7Z410 1059 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 VTCN1Q7Z7D3 282 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 PARP8Q8N3A8 854 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 ARHGEF39Q8N4T4 335 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 ATG16L2Q8NAA4 619 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 OR4A15Q8NGL6 344 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 CSF3RQ99062 836 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 WDR12Q9GZL7 423 aaKnown RBP10.99□□□□□ -0.65
VRK3-223ENST00000601341 RIBC2Q9H4K1 309 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 HMG20AQ9NP66 347 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 MS4A12Q9NXJ0 267 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 TAS2R7Q9NYW3 318 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 PHF11Q9UIL8 331 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 FBXW2Q9UKT8 454 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 MRPS2Q9Y399 296 aaKnown RBP10.99□□□□□ -0.65
VRK3-223ENST00000601341 HEMK1Q9Y5R4 338 aaPredicted RBP10.99□□□□□ -0.65
VRK3-223ENST00000601341 RP1P56715 2156 aa10.99□□□□□ -0.65
VRK3-223ENST00000601341 IGHV5-10-1A0A0J9YXX1 117 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 A0A1W2PR48 441 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 HYKKA2RU49 373 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 FITM1A5D6W6 292 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 TMEM150CB9EJG8 249 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 PTGES3LE9PB15 166 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 PROM1O43490 865 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 OR2B3O76000 313 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 CD247P20963 164 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 TLX1P31314 330 aaPredicted RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 BUD31P41223 144 aaPredicted RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 HMGA2P52926 109 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 CRYBA2P53672 197 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 SNRPNP63162 240 aaKnown RBP10.98□□□□□ -0.65
VRK3-223ENST00000601341 OCA2Q04671 838 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 NPTX1Q15818 432 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 ZNF385BQ569K4 471 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 GCNT6Q5T4J0 391 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 UBE2UQ5VVX9 321 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 MMP21Q8N119 569 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 CNIH3Q8TBE1 160 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 CHPT1Q8WUD6 406 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 YIPF6Q96EC8 236 aa10.98□□□□□ -0.65
VRK3-223ENST00000601341 COX4I2Q96KJ9 171 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms