RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 PPP1R36Q96LQ0 422 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 GPR137Q96N19 417 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 SH3GL2Q99962 352 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 FAM173AQ9BQD7 235 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 TSPAN10Q9H1Z9 355 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-215ENST00000601150 GLIPR2Q9H4G4 154 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 MANSC1Q9H8J5 431 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 SH2D2AQ9NP31 389 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 PNPOQ9NVS9 261 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 CNIH4Q9P003 139 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 SH3BP4Q9P0V3 963 aa15.53■□□□□ 0.08
TRIM28-215ENST00000601150 EIF3LQ9Y262 564 aaKnown RBP15.53■□□□□ 0.08
TRIM28-215ENST00000601150 A0A087WV62 115 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 A0A0G2JMM0 328 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 A0A1W2PPB8 328 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 A0A1W2PRS3 328 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 KIR3DP1A8MWS1 328 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 NPIPA5E9PKD4 350 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 G3V3Y1 287 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 TP53I11O14683 189 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 TFECO14948 347 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-215ENST00000601150 ACOX3O15254 700 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 COQ9O75208 318 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 SNNO75324 88 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-215ENST00000601150 ZIC2O95409 532 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-215ENST00000601150 NAGAP17050 411 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 RFC3P40938 356 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 MC3RP41968 323 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 EMX2Q04743 252 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 UBAP2LQ14157 1087 aaKnown RBP15.52■□□□□ 0.08
TRIM28-215ENST00000601150 NNATQ16517 81 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 ZNF385BQ569K4 471 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 TTMPQ5BVD1 217 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 TMEM107Q6UX40 140 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 FAM47EQ6ZV65 393 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 CIDECQ96AQ7 238 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-215ENST00000601150 AKTIPQ9H8T0 292 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 TAS2R9Q9NYW1 312 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 NOP53Q9NZM5 478 aaKnown RBP15.52■□□□□ 0.08
TRIM28-215ENST00000601150 ATP6V1HQ9UI12 483 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 NPIPA1Q9UND3 350 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 OSGIN2Q9Y236 505 aa15.52■□□□□ 0.08
TRIM28-215ENST00000601150 PINLYPA6NC86 204 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 FRG2CA6NGY1 282 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 HMGB1P1B2RPK0 211 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 PLOD2O00469 737 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 SCAMP2O15127 329 aaKnown RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 ASNA1O43681 348 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 WISP2O76076 250 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 IFI6P09912 130 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 ABCD3P28288 659 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 PLGLB1Q02325 96 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 RBPJQ06330 500 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 SRSF1Q07955 248 aaKnown RBP eCLIP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 HSPB3Q12988 150 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 PTGR1Q14914 329 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 RPS6KA2Q15349 733 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 BNC2Q6ZN30 1099 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 ZNF551Q7Z340 670 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 PRR22Q8IZ63 422 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 FBXW8Q8N3Y1 598 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 OR5M3Q8NGP4 307 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 ELP4Q96EB1 424 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 ZBED6CLQ96FA7 236 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 VSTM2LQ96N03 204 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 BTBD9Q96Q07 612 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 NUF2Q9BZD4 464 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 FOLH1BQ9HBA9 442 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 ACSS1Q9NUB1 689 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 DDX18Q9NVP1 670 aaKnown RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 ASIC5Q9NY37 505 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 CNOT11Q9UKZ1 510 aaKnown RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 C19orf53Q9UNZ5 99 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 GPR55Q9Y2T6 319 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 CHCHD2Q9Y6H1 151 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-215ENST00000601150 HIVEP3Q5T1R4 2406 aa15.51■□□□□ 0.07
TRIM28-215ENST00000601150 ACOT7O00154 380 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 KLF11O14901 512 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 TO15178 435 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 ERN1O75460 977 aaKnown RBP15.5■□□□□ 0.07
TRIM28-215ENST00000601150 PPM1BO75688 479 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 AGFG2O95081 481 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 G6PDP11413 515 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 PRPS1L1P21108 318 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 GPC1P35052 558 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 PIGAP37287 484 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 FRKP42685 505 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-215ENST00000601150 DNASE1L1P49184 302 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 MANFP55145 182 aaKnown RBP15.5■□□□□ 0.07
TRIM28-215ENST00000601150 FBXW4P57775 412 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 PPIAP62937 165 aaKnown RBP15.5■□□□□ 0.07
TRIM28-215ENST00000601150 PSPHP78330 225 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 RPP38P78345 283 aaKnown RBP15.5■□□□□ 0.07
TRIM28-215ENST00000601150 PLCXD2Q0VAA5 305 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 RGS9BPQ6ZS82 235 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 LRRC34Q8IZ02 419 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 OR2L13Q8N349 312 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 ZNF75CPQ92670 426 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-215ENST00000601150 OMA1Q96E52 524 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 SECISBP2Q96T21 854 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms