RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 WNT3P56703 355 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 MAD2L1Q13257 205 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 MLC1Q15049 377 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 CT45A2Q5DJT8 189 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 TMEM64Q6YI46 380 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 SIAH3Q8IW03 269 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 SULF2Q8IWU5 870 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 GOLM1Q8NBJ4 401 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 PSD4Q8NDX1 1056 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 SPACA9Q96E40 222 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 TEX37Q96LM6 180 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 INTS9Q9NV88 658 aaKnown RBP17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 HPF1Q9NWY4 346 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 BCAP29Q9UHQ4 241 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 EIF3LQ9Y262 564 aaKnown RBP17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 CHCHD2Q9Y6H1 151 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 NCKAP5O14513 1909 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 SLCO1B7G3V0H7 640 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 SCN2BO60939 215 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 VPS4BO75351 444 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 RASAL1O95294 804 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 CBX6O95503 412 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 EFNA1P20827 205 aaPredicted RBP17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 NTSP30990 170 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 MAP3K8P41279 467 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 UQCRFS1P47985 274 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 PHC1P78364 1004 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 ESPL1Q14674 2120 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 NTRK2Q16620 822 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 EXOSC6Q5RKV6 272 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 C6orf163Q5TEZ5 329 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 OPN5Q6U736 354 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 EPGNQ6UW88 154 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 CPSF7Q8N684 471 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 HORMAD2Q8N7B1 307 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 GALNT11Q8NCW6 608 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 SLC22A8Q8TCC7 542 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 PAQR8Q8TEZ7 354 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 GIMAP5Q96F15 307 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 OR52B2Q96RD2 323 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 FOLH1BQ9HBA9 442 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 RYDENQ9NUL5 291 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 AIG1Q9NVV5 245 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 SH3BP4Q9P0V3 963 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 NINQ8N4C6 2090 aa17.97■□□□□ 0.47
SHKBP1-221ENST00000599833 GOLGA8QA0A0J9YX86 632 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 GOLGA8OA6NCC3 632 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 GOLGA8NF8WBI6 632 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 BCAS2O75934 225 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 PRPS1L1P21108 318 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 DRD5P21918 477 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 ABCD3P28288 659 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 IL12AP29459 219 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 HPCAL1P37235 193 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 PPICP45877 212 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 CORO7P57737 925 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 PSG6Q00889 435 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 HSPB3Q12988 150 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 NNATQ16517 81 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 MAPKAPK3Q16644 382 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 DESI1Q6ICB0 168 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 RTL4Q6ZR62 310 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 R3HCC1LQ7Z5L2 792 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 TMEM178AQ8NBL3 297 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 OR10G3Q8NGC4 313 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 PSMA8Q8TAA3 256 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 LRRC8CQ8TDW0 803 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 ACTRT2Q8TDY3 377 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 NR4A3Q92570 626 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 LCORQ96JN0 433 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 MAGEB18Q96M61 343 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 C5orf34Q96MH7 638 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 PRODH2Q9UF12 536 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 CNOT11Q9UKZ1 510 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 NPFFR2Q9Y5X5 522 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 GPR45Q9Y5Y3 372 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 USH1CQ9Y6N9 552 aa17.96■□□□□ 0.47
SHKBP1-221ENST00000599833 FRG2CA6NGY1 282 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 TRPC5OSA6NMA1 111 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 WISP1O95388 367 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 ZFP36L2P47974 494 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 FOXO1Q12778 655 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 MRPL49Q13405 166 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 TMEM198Q66K66 360 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 PRR22Q8IZ63 422 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 BCORP1Q8N888 145 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 ZFP62Q8NB50 900 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 DNAJB8Q8NHS0 232 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 RNF138Q8WVD3 245 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 HGDQ93099 445 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 ZBED6CLQ96FA7 236 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 SGCZQ96LD1 299 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 CFL2Q9Y281 166 aa17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 KLF13Q9Y2Y9 288 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-221ENST00000599833 LRRK2Q5S007 2527 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 ADAM10O14672 748 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 PEX1O43933 1283 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 GLSO94925 669 aaPredicted RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms