RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 HAT1O14929 419 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 TYROBPO43914 113 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 ECDO95905 644 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 ABHD2P08910 425 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 GIG44P09565 113 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 GDF1P27539 372 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 CHRNA3P32297 505 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 MDH2P40926 338 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 CCL11P51671 97 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 HNRNPFP52597 415 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 SLC25A1P53007 311 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 SSTP61278 116 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 HAND2P61296 217 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 IGLV3-21P80748 117 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 BTG3Q14201 252 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 CARTPTQ16568 116 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 RSBN1Q5VWQ0 802 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 ATRAIDQ6UW56 229 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 GCNT7Q6ZNI0 430 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 MLKLQ8NB16 471 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 COLGALT1Q8NBJ5 622 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 C9orf85Q96MD7 179 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 SPATA13Q96N96 652 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 APOOQ9BUR5 198 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 DDX47Q9H0S4 455 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 TSPY26PQ9H489 355 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 RAD54L2Q9Y4B4 1467 aa3.35□□□□□ -1.87
SMCHD1-204ENST00000581226 TRBV2A0A0J9YWF9 115 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 GPAA1O43292 621 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 LRP3O75074 770 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 GJB5O95377 273 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 LY6G6DO95868 133 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 WNT2P09544 360 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 SLC35E2P0CK97 266 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 LAMP1P11279 417 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 ACP1P24666 158 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 OAS2P29728 719 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 ARHGDIBP52566 201 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 SRP54P61011 504 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 CXCL6P80162 114 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 ZNF85Q03923 595 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 ZNF33BQ06732 778 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 BNIP1Q12981 228 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 ETFRF1Q6IPR1 90 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 DPY19L2P2Q6ZN68 376 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 YRDCQ86U90 279 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 SNX32Q86XE0 403 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 C11orf42Q8N5U0 333 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 TMEM185AQ8NFB2 350 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 ATP6V0A1Q93050 837 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 LHX4Q969G2 390 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 TMEM45BQ96B21 275 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 CCT8L2Q96SF2 557 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 DEFB126Q9BYW3 111 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 HOMER3Q9NSC5 361 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 ZNF275Q9NSD4 429 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 LHX3Q9UBR4 397 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 MIOXQ9UGB7 285 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 RNF115Q9Y4L5 304 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 KIF25-AS1Q9Y6Z4 181 aa3.34□□□□□ -1.87
SMCHD1-204ENST00000581226 SYCE3A1L190 88 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 MFSD2BA6NFX1 497 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 A8MX80 341 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 DDX39AO00148 427 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 OLFM2O95897 454 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 GHRP10912 638 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 GNSP15586 552 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 HLA-DPA1P20036 260 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 IDSP22304 550 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 MEOX2P50222 304 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 NDPQ00604 133 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 UBXN1Q04323 297 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 CBX3Q13185 183 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 ZKSCAN8Q15776 578 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 TTC31Q49AM3 519 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 TATDN1Q6P1N9 297 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 C2orf66Q6UXQ4 117 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 TSEN54Q7Z6J9 526 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 RANBP3LQ86VV4 465 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 CHCHD4Q8N4Q1 142 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 ZNF525Q8N782 197 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 ZNF713Q8N859 430 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 Q8N9G6 341 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 OR4F17Q8NGA8 305 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 RFESDQ8TAC1 157 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 TFB1MQ8WVM0 346 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 BADQ92934 168 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 OR4F4Q96R69 305 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 OR5M11Q96RB7 305 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 CBWD1Q9BRT8 395 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 ACAT2Q9BWD1 397 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 FAM124BQ9H5Z6 455 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 ALG9Q9H6U8 611 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 TRIM10Q9UDY6 481 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 APPL1Q9UKG1 709 aa3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 ZNF646O15015 1829 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-204ENST00000581226 C11orf98E9PRG8 122 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 G3V3Y1 287 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 DUSP14O95147 198 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 TMOD1P28289 359 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms