RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 GIMAP5Q96F15 307 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 FNDC11Q9BVV2 318 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 UCK2Q9BZX2 261 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 SLC2A4RGQ9NR83 387 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 PLCXD1Q9NUJ7 323 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 TMEM74BQ9NUR3 256 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 FTSJ1Q9UET6 329 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 PSORS1C1Q9UIG5 152 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 LIPT1Q9Y234 373 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 MRPS2Q9Y399 296 aaKnown RBP13.19□□□□□ -0.3
VPS33B-208ENST00000574755 KLK4Q9Y5K2 254 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 SLC22A7Q9Y694 548 aa13.19□□□□□ -0.3
VPS33B-208ENST00000574755 ZAR1LA6NP61 321 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 CLCA1A8K7I4 914 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 GABRB1P18505 474 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 MAN2A2P49641 1150 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 ST13P50502 369 aaKnown RBP13.18□□□□□ -0.3
VPS33B-208ENST00000574755 UGT2B15P54855 530 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 RELAQ04206 551 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 CHRNEQ04844 493 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 BNIP3Q12983 259 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 DCTN2Q13561 401 aaKnown RBP13.18□□□□□ -0.3
VPS33B-208ENST00000574755 TDGQ13569 410 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 ZNF311Q5JNZ3 666 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 SYT6Q5T7P8 510 aaPredicted RBP13.18□□□□□ -0.3
VPS33B-208ENST00000574755 PRAMEF8Q5VWM4 474 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 MLIPQ5VWP3 458 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 PRAMEF7Q5VXH5 474 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 TMEFF1Q8IYR6 380 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 DNAJC22Q8N4W6 341 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 ZDHHC1Q8WTX9 485 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 MYDGFQ969H8 173 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 SLC6A18Q96N87 628 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 MS4A4EQ96PG1 132 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 SIGLEC11Q96RL6 698 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 PINK1Q9BXM7 581 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 SLC38A1Q9H2H9 487 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 GPR27Q9NS67 375 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 DNAAF2Q9NVR5 837 aaKnown RBP13.18□□□□□ -0.3
VPS33B-208ENST00000574755 CALML5Q9NZT1 146 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 GON4LQ3T8J9 2241 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 A0A1B0GVG6 124 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 B4DGG1 531 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 FOXD2O60548 495 aaPredicted RBP13.18□□□□□ -0.3
VPS33B-208ENST00000574755 SOX14O95416 240 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 OSMP13725 252 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 TYRP1P17643 537 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 HPCAP84074 193 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 TARDBPQ13148 414 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS33B-208ENST00000574755 ARMC6Q6NXE6 501 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 RNF44Q7L0R7 432 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 ZNF438Q7Z4V0 828 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 TRNT1Q96Q11 434 aaKnown RBP13.18□□□□□ -0.3
VPS33B-208ENST00000574755 LMAN1LQ9HAT1 526 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 CTPS2Q9NRF8 586 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 SLC13A4Q9UKG4 626 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 CA14Q9ULX7 337 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 SLC6A14Q9UN76 642 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 SPACA6W5XKT8 324 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 DSPPQ9NZW4 1301 aa13.18□□□□□ -0.3
VPS33B-208ENST00000574755 A0A1W2PRQ8 180 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 SH3PXD2BA1X283 911 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 OR5K3A6NET4 321 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 DUXAA6NLW8 204 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 H3BN98 237 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 BCAS1O75363 584 aaPredicted RBP13.17□□□□□ -0.3
VPS33B-208ENST00000574755 ALPPP05187 535 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 ACVR2AP27037 513 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 C21orf33P30042 268 aaPredicted RBP13.17□□□□□ -0.3
VPS33B-208ENST00000574755 CNR2P34972 360 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 ID2Q02363 134 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 TEKQ02763 1124 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 CCDC85BQ15834 202 aaPredicted RBP13.17□□□□□ -0.3
VPS33B-208ENST00000574755 CTF1Q16619 201 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 PGBD2Q6P3X8 592 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 PTCHD4Q6ZW05 846 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 CSNK1A1LQ8N752 337 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 SLC16A11Q8NCK7 471 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 SLC9A6Q92581 669 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 RSC1A1Q92681 617 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 GGHQ92820 318 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 PRRC1Q96M27 445 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 CCDC3Q9BQI4 270 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 UBE2ZQ9H832 354 aaPredicted RBP13.17□□□□□ -0.3
VPS33B-208ENST00000574755 LYRM4Q9HD34 91 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 GIN1Q9NXP7 522 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 GPR83Q9NYM4 423 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 LDB3O75112 727 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 LCKP06239 509 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 CPMP14384 443 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 NUDT1P36639 197 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 VSX2P58304 361 aaPredicted RBP13.17□□□□□ -0.3
VPS33B-208ENST00000574755 AQP6Q13520 282 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 SPCS2Q15005 226 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 FAM214AQ32MH5 1076 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 MFSD12Q6NUT3 480 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 PODNL1Q6PEZ8 512 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 CHRDL2Q6WN34 429 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 USP53Q70EK8 1073 aa13.17□□□□□ -0.3
VPS33B-208ENST00000574755 VRK2Q86Y07 508 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms