RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TPOP07202 933 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CRYGCP07315 174 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MMP3P08254 477 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CTXN2P0C2S0 81 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 OR52Z1P0C646 297 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ADORA3P0DMS8 318 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 RALBP11234 206 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 FCGR1AP12314 374 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ANXA7P20073 488 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 PAICSP22234 425 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 LMO1P25800 156 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PSMB6P28072 239 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ACADLP28330 430 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TEAD1P28347 426 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 YWHABP31946 246 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 SHMT2P34897 504 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CPOXP36551 454 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TGFBR2P37173 567 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MAP3K8P41279 467 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ALDH3B1P43353 468 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MAGEB1P43366 347 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SRP9P49458 86 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 HLCSP50747 726 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CEBPGP53567 150 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 METAP1P53582 386 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 BCAT1P54687 386 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 NAGLUP54802 743 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CDH15P55291 814 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ARPP19P56211 112 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 GMFBP60983 142 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PSME3P61289 254 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 DCAF7P61962 342 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 RPS16P62249 146 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 SP3Q02447 781 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CSTF1Q05048 431 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 TNFRSF9Q07011 255 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ACSM1Q08AH1 577 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ECH1Q13011 328 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 AQP6Q13520 282 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 NAE1Q13564 534 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PIGHQ14442 188 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 SLC29A2Q14542 456 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 LASP1Q14847 261 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 FAM189A2Q15884 450 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SRSF7Q16629 238 aaKnown RBP eCLIP3.07□□□□□ -1.92
VPS35-208ENST00000568612 DGUOKQ16854 277 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 FAM83EQ2M2I3 478 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 COL28A1Q2UY09 1125 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TRIM60Q495X7 471 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ACTBL2Q562R1 376 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ZNF311Q5JNZ3 666 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 EPHA10Q5JZY3 1008 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ARMC12Q5T9G4 340 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ATPAF1Q5TC12 328 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 PRAMEF17Q5VTA0 474 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MEDAGQ5VYS4 303 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 WSCD1Q658N2 575 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 KDM4DQ6B0I6 523 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 REP15Q6BDI9 236 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CYB5RLQ6IPT4 315 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 C1orf94Q6P1W5 598 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PNCKQ6P2M8 343 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ZNF773Q6PK81 442 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TEX261Q6UWH6 196 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SERPINA13PQ6UXR4 307 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ZNF813Q6ZN06 617 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MBOAT1Q6ZNC8 495 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ZBTB49Q6ZSB9 765 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 Q6ZWC4 215 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PGAP1Q75T13 922 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TRILQ7L0X0 811 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TAF8Q7Z7C8 310 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 IQCHQ86VS3 1027 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TMEM17Q86X19 198 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 NUDT13Q86X67 352 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 RAB43Q86YS6 212 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SNX29P2Q8IUI4 249 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ADGRF4Q8IZF3 695 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 RDH10Q8IZV5 341 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 FAM185AQ8N0U4 392 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 LGI2Q8N0V4 545 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PRSS35Q8N3Z0 413 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 RASGEF1CQ8N431 466 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TMEM199Q8N511 208 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 C12orf45Q8N5I9 185 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 MINDY1Q8N5J2 469 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ATPAF2Q8N5M1 289 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PNLDC1Q8NA58 520 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 ANKRD52Q8NB46 1076 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 POGLUT1Q8NBL1 392 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PAPD5Q8NDF8 572 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 TMEM104Q8NE00 496 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 C17orf47Q8NEP4 570 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 OR56A3Q8NH54 315 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 RHOXF1Q8NHV9 184 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 STOML3Q8TAV4 291 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SPATA20Q8TB22 786 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CD300LFQ8TDQ1 290 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 WFIKKN2Q8TEU8 576 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 NXNL1Q96CM4 212 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms