RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ERI1Q8IV48 349 aaKnown RBP1.85□□□□□ -2.11
VPS35-207ENST00000568191 CEND1Q8N111 149 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 OR6M1Q8NGM8 313 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 OR4L1Q8NH43 312 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 RDH11Q8TC12 318 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 TEKT1Q969V4 418 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 MARC2Q969Z3 335 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 CAPNS2Q96L46 248 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 JAKMIP1Q96N16 626 aaKnown RBP1.85□□□□□ -2.11
VPS35-207ENST00000568191 ZNF184Q99676 751 aaPredicted RBP1.85□□□□□ -2.11
VPS35-207ENST00000568191 ZNF350Q9GZX5 532 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 ZNF702PQ9H963 129 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 DNAJC17Q9NVM6 304 aaKnown RBP1.85□□□□□ -2.11
VPS35-207ENST00000568191 SMC3Q9UQE7 1217 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 RNF115Q9Y4L5 304 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 CHD4Q14839 1912 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 A0A0U1RQK1 487 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 C13orf42A0A1B0GVH6 325 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 ZNF320A2RRD8 509 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 C11orf98E9PRG8 122 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 EEF2KO00418 725 aaKnown RBP1.84□□□□□ -2.11
VPS35-207ENST00000568191 CYB561D2O14569 222 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 EI24O14681 340 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 LATO43561 262 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 DFNA5O60443 496 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 PDE5AO76074 875 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 OAS1P00973 400 aaKnown RBP1.84□□□□□ -2.11
VPS35-207ENST00000568191 GSTA1P08263 222 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 IDSP22304 550 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 GABRR1P24046 479 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 IL2RGP31785 369 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 OR3A4PP47883 348 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 NME5P56597 212 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 GNB2P62879 340 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 ROR1Q01973 937 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 TEFQ10587 303 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 GK2Q14410 553 aaPredicted RBP1.84□□□□□ -2.11
VPS35-207ENST00000568191 SHHQ15465 462 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 TYSND1Q2T9J0 566 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 GLYR1Q49A26 553 aaPredicted RBP1.84□□□□□ -2.11
VPS35-207ENST00000568191 KCTD9Q7L273 389 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 TMEM126BQ8IUX1 230 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 UNC5CLQ8IV45 518 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 SIAH3Q8IW03 269 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 RFESDQ8TAC1 157 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 ADAMTS16Q8TE57 1224 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 UBTD2Q8WUN7 234 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 HAS2Q92819 552 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 ADPGKQ9BRR6 497 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 GPR174Q9BXC1 333 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 LCE3DQ9BYE3 92 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 OSBPL8Q9BZF1 889 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 SLC25A39Q9BZJ4 359 aaPredicted RBP1.84□□□□□ -2.11
VPS35-207ENST00000568191 OPN3Q9H1Y3 402 aaPredicted RBP1.84□□□□□ -2.11
VPS35-207ENST00000568191 ZDHHC6Q9H6R6 413 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 ESM1Q9NQ30 184 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 HPS4Q9NQG7 708 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 VPS54Q9P1Q0 977 aa1.84□□□□□ -2.11
VPS35-207ENST00000568191 ASTN1O14525 1302 aa1.84□□□□□ -2.12
VPS35-207ENST00000568191 KIF7Q2M1P5 1343 aa1.84□□□□□ -2.12
VPS35-207ENST00000568191 A0A0A6YYD4 124 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 WWP2O00308 870 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 SLC17A2O00624 439 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 CFLARO15519 480 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 GMNNO75496 209 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 SLC2A10O95528 541 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 TNNT3P45378 269 aaPredicted RBP1.83□□□□□ -2.12
VPS35-207ENST00000568191 SERPINH1P50454 418 aaKnown RBP1.83□□□□□ -2.12
VPS35-207ENST00000568191 ZNF131P52739 623 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 BNIP1Q12981 228 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 MPPED2Q15777 294 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 ZNF789Q5FWF6 425 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 TFDP3Q5H9I0 405 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 HECTD3Q5T447 861 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 AGBL2Q5U5Z8 902 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 MEDAGQ5VYS4 303 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 KCTD11Q693B1 232 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 STEAP1BQ6NZ63 245 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 TGIF2LYQ8IUE0 185 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 STHQ8IWL8 128 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 MCOLN2Q8IZK6 566 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 SFRP1Q8N474 314 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 COG3Q96JB2 828 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 SPATA17Q96L03 361 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 DDX50Q9BQ39 737 aaKnown RBP1.83□□□□□ -2.12
VPS35-207ENST00000568191 SLC26A1Q9H2B4 701 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 GANQ9H2C0 597 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 CENPMQ9NSP4 180 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 PNPLA3Q9NST1 481 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 DIMT1Q9UNQ2 313 aaKnown RBP1.83□□□□□ -2.12
VPS35-207ENST00000568191 LRRK1Q38SD2 2015 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 CDC42BPBQ9Y5S2 1711 aa1.83□□□□□ -2.12
VPS35-207ENST00000568191 H0Y626 953 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 PSMA7O14818 248 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 HTATSF1O43719 755 aaKnown RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 ZNF861PO60384 105 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 GPX5O75715 221 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 REC8O95072 547 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 TXNDC12O95881 172 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 ALPIP09923 528 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms