RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 IFT88Q13099 833 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 TRAF3Q13114 568 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 KEAP1Q14145 624 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 RCAN2Q14206 197 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 POU4F3Q15319 338 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 PRICKLE4Q2TBC4 344 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 DEFB113Q30KQ7 82 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 FAM180BQ6P0A1 224 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 SLC48A1Q6P1K1 146 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 METTL2BQ6P1Q9 378 aaKnown RBP15.36■□□□□ 0.05
CLN3-211ENST00000564091 RPS27LQ71UM5 84 aaKnown RBP15.36■□□□□ 0.05
CLN3-211ENST00000564091 NUP54Q7Z3B4 507 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 COMMD6Q7Z4G1 85 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 CAMKMTQ7Z624 323 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 VWA5B2Q8N398 1253 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 METTL4Q8N3J2 472 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 WFDC11Q8NEX6 87 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 ADCY4Q8NFM4 1077 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 RDH11Q8TC12 318 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 SLC44A1Q8WWI5 657 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 TUBA1CQ9BQE3 449 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 YIPF4Q9BSR8 244 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 NTMT1Q9BV86 223 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 MAT2BQ9NZL9 334 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 FETUBQ9UGM5 382 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 PCTPQ9UKL6 214 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 SLC12A4Q9UP95 1085 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 MAPRE3Q9UPY8 281 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 FLNAP21333 2647 aaKnown RBP15.36■□□□□ 0.05
CLN3-211ENST00000564091 A0A1B0GTL3 188 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 CLCA1A8K7I4 914 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 PPP6CO00743 305 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 SNPHO15079 494 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 CDH16O75309 829 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 UGT2B11O75310 529 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 IL18BPO95998 194 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 ACTL6AO96019 429 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 CYP4B1P13584 511 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 SORDQ00796 357 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 SLC7A5Q01650 507 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 DUSP2Q05923 314 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 PLCXD2Q0VAA5 305 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 MAP4K2Q12851 820 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 SLC30A6Q6NXT4 461 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 PAGE2Q7Z2X7 111 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 MILR1Q7Z6M3 343 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 LUZP2Q86TE4 346 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 OR4F6Q8NGB9 312 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 OR52R1Q8NGF1 315 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 ZPLD1Q8TCW7 415 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 TM4SF18Q96CE8 201 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 LCORQ96JN0 433 aaPredicted RBP15.35■□□□□ 0.05
CLN3-211ENST00000564091 OSBPL11Q9BXB4 747 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 ELOVL6Q9H5J4 265 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 FARSBQ9NSD9 589 aaKnown RBP15.35■□□□□ 0.05
CLN3-211ENST00000564091 KLRF1Q9NZS2 232 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 ZNF639Q9UID6 485 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 CFL2Q9Y281 166 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 PLLPQ9Y342 182 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 NINQ8N4C6 2090 aa15.35■□□□□ 0.05
CLN3-211ENST00000564091 C1orf226A1L170 272 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 GOLGA6L10A6NI86 522 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 H0Y3Z8 333 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 ERN1O75460 977 aaKnown RBP15.34■□□□□ 0.05
CLN3-211ENST00000564091 CBX7O95931 251 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 CPN1P15169 458 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 TSPAN8P19075 237 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 STARP49675 285 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 GALNT1Q10472 559 aaPredicted RBP15.34■□□□□ 0.05
CLN3-211ENST00000564091 LTB4RQ15722 352 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 TRMT12Q53H54 448 aaKnown RBP15.34■□□□□ 0.05
CLN3-211ENST00000564091 WDSUB1Q8N9V3 476 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 OR14L1PQ8NHC6 308 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 INTS12Q96CB8 462 aaKnown RBP15.34■□□□□ 0.05
CLN3-211ENST00000564091 KLHL29Q96CT2 875 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 SMR3AQ99954 134 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 RBM24Q9BX46 236 aaKnown RBP15.34■□□□□ 0.05
CLN3-211ENST00000564091 XPR1Q9UBH6 696 aa15.34■□□□□ 0.05
CLN3-211ENST00000564091 EXO1Q9UQ84 846 aaKnown RBP15.34■□□□□ 0.05
CLN3-211ENST00000564091 A0A1W2PPR1 153 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 PRAMEF25A6NGN4 478 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 STX16-NPEPL1H3BU86 382 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 STX16O14662 325 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 GUCY1B2O75343 617 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 NME6O75414 186 aaPredicted RBP15.33■□□□□ 0.04
CLN3-211ENST00000564091 PDYNP01213 254 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 HRGP04196 525 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 ATP1B1P05026 303 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 RBP1P09455 135 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 FOSL1P15407 271 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 PCSK2P16519 638 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 CSNK2A2P19784 350 aaPredicted RBP15.33■□□□□ 0.04
CLN3-211ENST00000564091 CASQ1P31415 396 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 GCKP35557 465 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 CDH13P55290 713 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 MRPS35P82673 323 aaKnown RBP15.33■□□□□ 0.04
CLN3-211ENST00000564091 TMEM81Q6P7N7 255 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 Q71RC1 249 aaPredicted RBP15.33■□□□□ 0.04
CLN3-211ENST00000564091 TRIM42Q8IWZ5 723 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 TRPC4APQ8TEL6 797 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms