RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 RELL2Q8NC24 303 aaPredicted RBP17.36■□□□□ 0.37
VPS35-202ENST00000561713 ANKRA2Q9H9E1 313 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 AHSPQ9NZD4 102 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 TMEM216Q9P0N5 145 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 TRPS1Q9UHF7 1281 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 CBLCQ9ULV8 474 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 EDARQ9UNE0 448 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 C15orf41Q9Y2V0 281 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 PLLPQ9Y342 182 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 MED12LQ86YW9 2145 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 C1orf226A1L170 272 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 C2orf72A6NCS6 295 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 GOLGA8RI6L899 631 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 MANBAO00462 879 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 CBX7O95931 251 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 SNRPAP09012 282 aaKnown RBP17.35■□□□□ 0.37
VPS35-202ENST00000561713 PCSK2P16519 638 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 BMP5P22003 454 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 DEKP35659 375 aaKnown RBP17.35■□□□□ 0.37
VPS35-202ENST00000561713 TMED10P49755 219 aaKnown RBP17.35■□□□□ 0.37
VPS35-202ENST00000561713 NRG3P56975 720 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 CLCQ05315 142 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 FLYWCH1Q4VC44 716 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 EIPR1Q53HC9 387 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 UNC50Q53HI1 259 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 GSPT2Q8IYD1 628 aaKnown RBP17.35■□□□□ 0.37
VPS35-202ENST00000561713 MNS1Q8NEH6 495 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 TP53INP1Q96A56 240 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 TM4SF18Q96CE8 201 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 MBD6Q96DN6 1003 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 GNRHR2Q96P88 292 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 SMR3AQ99954 134 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 SH3GL2Q99962 352 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 UBQLN3Q9H347 655 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 METTL7AQ9H8H3 244 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 GALNT9Q9HCQ5 603 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 ACKR4Q9NPB9 350 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 QPCTLQ9NXS2 382 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 HEY2Q9UBP5 337 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 SNX6Q9UNH7 406 aa17.35■□□□□ 0.37
VPS35-202ENST00000561713 GOLGA6L10A6NI86 522 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 HSPB2A8KAH6 182 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 CAPN14A8MX76 684 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 SUPT7LO94864 414 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 ESRRBO95718 433 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 KRT15P19012 456 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 CASP3P42574 277 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 CDK9P50750 372 aaKnown RBP17.34■□□□□ 0.37
VPS35-202ENST00000561713 PLCXD2Q0VAA5 305 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 HSPB2Q16082 182 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 WIPI1Q5MNZ9 446 aaPredicted RBP17.34■□□□□ 0.37
VPS35-202ENST00000561713 TBCELQ5QJ74 424 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 C10orf62Q5T681 223 aaPredicted RBP17.34■□□□□ 0.37
VPS35-202ENST00000561713 ANGPTL8Q6UXH0 198 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 Q71RC1 249 aaPredicted RBP17.34■□□□□ 0.37
VPS35-202ENST00000561713 WFDC11Q8NEX6 87 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 TNIP2Q8NFZ5 429 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 OR7G1Q8NGA0 311 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 OR52R1Q8NGF1 315 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 FAM222BQ8WU58 562 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 OMA1Q96E52 524 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 CNRIP1Q96F85 164 aaPredicted RBP17.34■□□□□ 0.37
VPS35-202ENST00000561713 KCNA7Q96RP8 456 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 NODALQ96S42 347 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 C1QTNF3Q9BXJ4 246 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 EBPLQ9BY08 206 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 ANGPTL4Q9BY76 406 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 ACPTQ9BZG2 426 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 TSPYL1Q9H0U9 437 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 BRF2Q9HAW0 419 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 PFDN4Q9NQP4 134 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 CAMK2AQ9UQM7 478 aa17.34■□□□□ 0.37
VPS35-202ENST00000561713 ANKRD33BA6NCL7 494 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 DLX3O60479 287 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 PPM1BO75688 479 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 ATP1B1P05026 303 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 ABCB1P08183 1280 aaPredicted RBP17.33■□□□□ 0.36
VPS35-202ENST00000561713 IL3P08700 152 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 HSD17B3P37058 310 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 PEX19P40855 299 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 HMGCS1Q01581 520 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 LTBQ06643 244 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 TRMT12Q53H54 448 aaKnown RBP17.33■□□□□ 0.36
VPS35-202ENST00000561713 ZNF678Q5SXM1 525 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 PAMR1Q6UXH9 720 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 GPRIN3Q6ZVF9 776 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 CAMKMTQ7Z624 323 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 HGDQ93099 445 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 EXOSC8Q96B26 276 aaKnown RBP17.33■□□□□ 0.36
VPS35-202ENST00000561713 UTS2RQ9UKP6 389 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 MAPRE3Q9UPY8 281 aa17.33■□□□□ 0.36
VPS35-202ENST00000561713 NSD1Q96L73 2696 aaPredicted RBP17.33■□□□□ 0.36
VPS35-202ENST00000561713 DVL2O14641 736 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 PCDH7O60245 1069 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 UGT2B11O75310 529 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 GUCY1B2O75343 617 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 ATE1O95260 518 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 ABHD2P08910 425 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 CSNK2A2P19784 350 aaPredicted RBP17.32■□□□□ 0.36
VPS35-202ENST00000561713 PTPN6P29350 595 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms