RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RPS19BP1Q86WX3 136 aaKnown RBP8.58□□□□□ -1.04
LDLR-210ENST00000559340 SNX32Q86XE0 403 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 HPS6Q86YV9 775 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 DND1Q8IYX4 353 aaKnown RBP8.58□□□□□ -1.04
LDLR-210ENST00000559340 CLECL1Q8IZS7 167 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 OR2L13Q8N349 312 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 DPP10Q8N608 796 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 ZNF615Q8N8J6 731 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 CDRT4Q8N9R6 151 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 APCDD1LQ8NCL9 501 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 OR7G2Q8NG99 324 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 OR52R1Q8NGF1 315 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 SLC22A8Q8TCC7 542 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 TM9SF4Q92544 642 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 VPS33AQ96AX1 596 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 HSPBAP1Q96EW2 488 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 MS4A4EQ96PG1 132 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 LMF1Q96S06 567 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 SH3GL1Q99961 368 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 ARHGAP9Q9BRR9 750 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 ACTRT3Q9BYD9 372 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 SLAMF7Q9NQ25 335 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 THUMPD1Q9NXG2 353 aaKnown RBP8.58□□□□□ -1.04
LDLR-210ENST00000559340 ARMCX1Q9P291 453 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 AP3M1Q9Y2T2 418 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 YARS2Q9Y2Z4 477 aaKnown RBP8.58□□□□□ -1.04
LDLR-210ENST00000559340 HEMK1Q9Y5R4 338 aaPredicted RBP8.58□□□□□ -1.04
LDLR-210ENST00000559340 EXPH5Q8NEV8 1989 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 RNF103-CHMP3A0A140T963 221 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 TMEM247A6NEH6 219 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 C9JVG2 144 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 UPK1AO00322 258 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ACOX3O15254 700 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 CBX7O95931 251 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ALOX5P09917 674 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ITGAMP11215 1152 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 SFTPCP11686 197 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 CAPN3P20807 821 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 DRD5P21918 477 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 MATN1P21941 496 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 KRT20P35900 424 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 CASRP41180 1078 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ZFP36L2P47974 494 aaKnown RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 PSMD4P55036 377 aaKnown RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 RPP38P78345 283 aaKnown RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 MRPS22P82650 360 aaKnown RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 CBX1P83916 185 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ZNF155Q12901 538 aaPredicted RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 NFYCQ13952 458 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 EXOSC7Q15024 291 aaKnown RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 FHL5Q5TD97 284 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 OPN5Q6U736 354 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ISLR2Q6UXK2 745 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 C6orf120Q7Z4R8 191 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 HORMAD2Q8N7B1 307 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 C16orf52Q8NHV5 167 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ADAMTS15Q8TE58 950 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 NUDT8Q8WV74 236 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 GTF2H4Q92759 462 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ROPN1LQ96C74 230 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 NEURL3Q96EH8 262 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 FAM120BQ96EK7 910 aaKnown RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 NSL1Q96IY1 281 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 LCORQ96JN0 433 aaPredicted RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 SLC35G5Q96KT7 338 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 GAL3ST4Q96RP7 486 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 SLC35A5Q9BS91 424 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ADNPQ9H2P0 1102 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 CDCP1Q9H5V8 836 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 EPS8L2Q9H6S3 715 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 CXorf36Q9H7Y0 433 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 FOLH1BQ9HBA9 442 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 Q9N2J8 555 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 SIRT3Q9NTG7 399 aaPredicted RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 EXD2Q9NVH0 621 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 GIN1Q9NXP7 522 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 NDE1Q9NXR1 346 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 GPR83Q9NYM4 423 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 STMN3Q9NZ72 180 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 MYOTQ9UBF9 498 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 TAGLN3Q9UI15 199 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 ZNF451Q9Y4E5 1061 aa8.57□□□□□ -1.04
LDLR-210ENST00000559340 PCDHGA9Q9Y5G4 932 aaKnown RBP8.57□□□□□ -1.04
LDLR-210ENST00000559340 TNRC6AQ8NDV7 1962 aaKnown RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 C15orf38-AP3S2A0A0A6YYH1 394 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 A6NL46 340 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 MRASO14807 208 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 CEACAM4O75871 244 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 AK1P00568 194 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 ESRRAP11474 423 aaPredicted RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 NAGAP17050 411 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 TMED10P49755 219 aaKnown RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 EMDP50402 254 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 SSR4P51571 173 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 NR0B1P51843 470 aaKnown RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 MLF1P58340 268 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 Q0VFX4 171 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 GNA13Q14344 377 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 EBPQ15125 230 aaKnown RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 TBR1Q16650 682 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms