RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CHTF18Q8WVB6 975 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 UTP4Q969X6 686 aaKnown RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 C19orf60Q96EN9 201 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 MAGEB18Q96M61 343 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 BBS4Q96RK4 519 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 SECISBP2Q96T21 854 aaKnown RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 FAM173AQ9BQD7 235 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 BRINP2Q9C0B6 783 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 GSTO2Q9H4Y5 243 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 TMEM165Q9HC07 324 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 SIRT5Q9NXA8 310 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 STX18Q9P2W9 335 aaKnown RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 UTS2RQ9UKP6 389 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ERVK-19Q9WJR5 959 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 OSGIN2Q9Y236 505 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 CSAG2Q9Y5P2 127 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ACTL7BQ9Y614 415 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 USH1CQ9Y6N9 552 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 CCDC88CQ9P219 2028 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 RP1L1Q8IWN7 2480 aaPredicted RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 GLOD5A6NK44 160 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 FAM47E-STBD1D6RA91 191 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 PYCARD-AS1I3L0S3 204 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 WWP2O00308 870 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 SEC22BO75396 215 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 NEURL1O76050 574 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ETHE1O95571 254 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 LYNP07948 512 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 SBK3P0C264 359 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 NAGAP17050 411 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 GRK2P25098 689 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 MEOX1P50221 254 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 MAD2L1Q13257 205 aaPredicted RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 ZNHIT3Q15649 155 aaPredicted RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 EIF2S3LQ2VIR3 472 aaKnown RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 PIGGQ5H8A4 983 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 IL20RBQ6UXL0 311 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 FAM47EQ6ZV65 393 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 TRIM46Q7Z4K8 759 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 ARHGAP24Q8N264 748 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ZNF721Q8TF20 911 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 SPACA9Q96E40 222 aaPredicted RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 PPP3R2Q96LZ3 170 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 GPR137Q96N19 417 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 SIGLEC12Q96PQ1 595 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 FAM111AQ96PZ2 611 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 RASL10BQ96S79 203 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 PRPF18Q99633 342 aaKnown RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 ZNF717Q9BY31 904 aaPredicted RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 CXorf21Q9HAI6 301 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 C3orf14Q9HBI5 128 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 C1orf109Q9NX04 203 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 BCAP29Q9UHQ4 241 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 DLGAP4Q9Y2H0 992 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ZFHX4Q86UP3 3567 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 BAHCC1Q9P281 2608 aa8.02□□□□□ -1.12
USP3-208ENST00000558285 TNRC6AQ8NDV7 1962 aaKnown RBP8.02□□□□□ -1.13
USP3-208ENST00000558285 HELZ2Q9BYK8 2649 aaKnown RBP8.02□□□□□ -1.13
USP3-208ENST00000558285 TRGV8A0A0C4DH27 118 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 NPIPA5E9PKD4 350 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 SNX4O95219 450 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 GBAP04062 536 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 IGKV3-11P04433 115 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 HNRNPCP07910 306 aaKnown RBP eCLIP8.02□□□□□ -1.133e-6■■□□□ 11.7
USP3-208ENST00000558285 STSP08842 583 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 DDCP20711 480 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 CNR1P21554 472 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 PSMD4P55036 377 aaKnown RBP8.02□□□□□ -1.13
USP3-208ENST00000558285 BTKQ06187 659 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 MAP4K2Q12851 820 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 MRPL49Q13405 166 aaKnown RBP8.02□□□□□ -1.13
USP3-208ENST00000558285 ARHGAP11AQ6P4F7 1023 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 THSD4Q6ZMP0 1018 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 NUDCD3Q8IVD9 361 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 C10orf107Q8IVU9 208 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 DDIASQ8IXT1 998 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 RNF175Q8N4F7 328 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 CDC26Q8NHZ8 85 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 PPWD1Q96BP3 646 aaKnown RBP8.02□□□□□ -1.13
USP3-208ENST00000558285 HSPBAP1Q96EW2 488 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 FRMD6Q96NE9 622 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 ACPTQ9BZG2 426 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 WWTR1Q9GZV5 400 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 OR10A5Q9H207 317 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 LRTM1Q9HBL6 345 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 FARSBQ9NSD9 589 aaKnown RBP8.02□□□□□ -1.13
USP3-208ENST00000558285 TEX10Q9NXF1 929 aaPredicted RBP8.02□□□□□ -1.13
USP3-208ENST00000558285 NKIRAS1Q9NYS0 192 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 TAS2R9Q9NYW1 312 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 EMCNQ9ULC0 261 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 NPIPA1Q9UND3 350 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 TIMM22Q9Y584 194 aa8.02□□□□□ -1.13
USP3-208ENST00000558285 TPD52L2O43399 206 aaKnown RBP8.01□□□□□ -1.13
USP3-208ENST00000558285 ASNA1O43681 348 aa8.01□□□□□ -1.13
USP3-208ENST00000558285 HS6ST1O60243 411 aa8.01□□□□□ -1.13
USP3-208ENST00000558285 SLC19A2O60779 497 aa8.01□□□□□ -1.13
USP3-208ENST00000558285 SOX30O94993 753 aa8.01□□□□□ -1.13
USP3-208ENST00000558285 HSPA4LO95757 839 aa8.01□□□□□ -1.13
USP3-208ENST00000558285 FGF4P08620 206 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms