RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 HSPB3Q12988 150 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 TSPAN31Q12999 210 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 IL18Q14116 193 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 SPOUT1Q5T280 376 aaKnown RBP15.35■□□□□ 0.05
SHMT2-231ENST00000557433 OR2G6Q5TZ20 316 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 BHLHB9Q6PI77 547 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 RASSF6Q6ZTQ3 369 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 TRMT11Q7Z4G4 463 aaKnown RBP15.35■□□□□ 0.05
SHMT2-231ENST00000557433 TMEM25Q86YD3 366 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 MMP21Q8N119 569 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 ARIH2OSQ8N7S6 290 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 TMEM145Q8NBT3 493 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 ZNF740Q8NDX6 193 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 NLGN4YQ8NFZ3 816 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-231ENST00000557433 SUN3Q8TAQ9 357 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 AKAP1Q92667 903 aaKnown RBP eCLIP15.35■□□□□ 0.05
SHMT2-231ENST00000557433 COQ10AQ96MF6 247 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 PINK1Q9BXM7 581 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 WASH6PQ9NQA3 447 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 PRKAG2Q9UGJ0 569 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 GPR34Q9UPC5 381 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 CLCA2Q9UQC9 943 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 NEDD8-MDP1E9PL57 170 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 ERVH48-1M5A8F1 160 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 SYT5O00445 386 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 B4GALT2O60909 372 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 OR2B3O76000 313 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 IFNA8P32881 189 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 SLC1A3P43003 542 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 HACD4Q5VWC8 232 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 TYW3Q6IPR3 259 aaKnown RBP15.35■□□□□ 0.05
SHMT2-231ENST00000557433 TMEM64Q6YI46 380 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 ZNF782Q6ZMW2 699 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-231ENST00000557433 TRAPPC5Q8IUR0 188 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 CADM2Q8N3J6 435 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 KLHL36Q8N4N3 616 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 MARVELD3Q96A59 401 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 TM9SF2Q99805 663 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 SAP130Q9H0E3 1048 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 OR51I1Q9H343 314 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 TOR4AQ9NXH8 423 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 RNF186Q9NXI6 227 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 SAGE1Q9NXZ1 904 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 CARD8Q9Y2G2 431 aa15.35■□□□□ 0.05
SHMT2-231ENST00000557433 A0A0G2JPF8 293 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 HNRNPCL2B2RXH8 293 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 HNRNPCL3B7ZW38 293 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 KIAA0355O15063 1070 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 HPGDSO60760 199 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 EFCAB14O75071 495 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 HNRNPCL4P0DMR1 293 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 OR12D1P0DN82 309 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 ERGP11308 486 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 ARSBP15848 533 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 ABATP80404 500 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 RPA4Q13156 261 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 LHX8Q68G74 356 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 TRILQ7L0X0 811 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 DCUN1D3Q8IWE4 304 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 FAM109AQ8N4B1 249 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 OR2L2Q8NH16 312 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 SFXN5Q8TD22 340 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 IRF7Q92985 503 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 RGMAQ96B86 450 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 KCTD12Q96CX2 325 aaKnown RBP15.34■□□□□ 0.05
SHMT2-231ENST00000557433 SORBS1Q9BX66 1292 aaKnown RBP15.34■□□□□ 0.05
SHMT2-231ENST00000557433 BEX2Q9BXY8 128 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 RRAGCQ9HB90 399 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 PTTG3PQ9NZH4 202 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 CBLCQ9ULV8 474 aa15.34■□□□□ 0.05
SHMT2-231ENST00000557433 EXOGQ9Y2C4 368 aaKnown RBP15.34■□□□□ 0.05
SHMT2-231ENST00000557433 YARS2Q9Y2Z4 477 aaKnown RBP15.34■□□□□ 0.05
SHMT2-231ENST00000557433 M0R3H8 397 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 CRYZL1O95825 349 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 RPN2P04844 631 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 HK1P19367 917 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 SSTR4P31391 388 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 ATP12AP54707 1039 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 GPLD1P80108 840 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 TRAM2Q15035 370 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 SYPL1Q16563 259 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 SYT14Q8NB59 555 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 NEIL3Q8TAT5 605 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 DNAJA4Q8WW22 397 aaPredicted RBP15.33■□□□□ 0.05
SHMT2-231ENST00000557433 SLC9A6Q92581 669 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 OSTF1Q92882 214 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 SNAPC3Q92966 411 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 MOAP1Q96BY2 351 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 MRGPRX3Q96LB0 322 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 SLC46A2Q9BY10 475 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 ZDHHC5Q9C0B5 715 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 MKRN2Q9H000 416 aaKnown RBP15.33■□□□□ 0.05
SHMT2-231ENST00000557433 KCNN2Q9H2S1 579 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 SERHL2Q9H4I8 314 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 B3GNT2Q9NY97 397 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 LIPT1Q9Y234 373 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 ITM2BQ9Y287 266 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 CDH10Q9Y6N8 788 aa15.33■□□□□ 0.05
SHMT2-231ENST00000557433 CCDC88CQ9P219 2028 aa15.33■□□□□ 0.04
SHMT2-231ENST00000557433 INMT-MINDY4F8WBC2 141 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms